rs252010591 SNP Detail

Summary

• ID
  rs252010591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7459826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTGG ACTATCAGCA
  GCTCCCTCCC AAATCTTCCC ATGCTATTCT CATCACGCCT CATCTACCTC AGAGTCTCAG
  AAAAAAAAAA AAAAAAAAAA AAAAATCTGG CATTCAGTTT AGCCAAAAAC AGTAACAGAA
  CTTCCTGATC CTTCTGGCGA ACAAAAAAAA AAAAAAATTT TTTTTTGGAA GGCTATATCA
  Y
  CCATTTAAGA TTGTGTCAAC CGGTCTGCAA ACCTGCAACG CCACCTTTTC CACCACTACC
  CCTCTCAAAA TCCTAGCGAC TTCATTTCTC CTACGTCCCA CCTGTCACAA TCCCCTGAGG
  CTCGCTAATC CTGCTCTAAG TCACCCCCAC CCCCCGACCC ACCCTAGGGC TCTCGGGCCT
  CCAGCACTCG ATCCATTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401693237	MGP_WTSI_19_7556951	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252010591					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401693237	MGP_WTSI_19_7556951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7459826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	31 bp proximal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	within coordinates
Rr543686	regulatory region 543686	731 bp proximal
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	520 bp downstream
Tssr5429	transcription start site region 5429	598 bp downstream
Tssr5430	transcription start site region 5430	691 bp downstream
Tssr5431	transcription start site region 5431	827 bp downstream
Tssr157986	transcription start site region 157986	120 bp upstream
Tssr157987	transcription start site region 157987	624 bp downstream
Tssr157988	transcription start site region 157988	676 bp downstream
Tssr157989	transcription start site region 157989	738 bp downstream
Tssr157990	transcription start site region 157990	751 bp downstream
Tssr157991	transcription start site region 157991	780 bp downstream