rs252016821 SNP Detail

Summary

• ID
  rs252016821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101006439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AAGAGAAGAG AAGAGAAGAG
  M
  AGAGAAGAGA AGAGAAGAGA AGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321627728	CHEV_5_101287592	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252016821					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101006439 () rs orientation: forward

Symbol	Name	Function Class
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr399195	regulatory region 399195	1680 bp downstream
Rr615577	regulatory region 615577	1561 bp distal
Rr615578	regulatory region 615578	1816 bp proximal