rs252020131 SNP Detail

Summary

• ID
  rs252020131
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110192574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAATCAG AATAACTCAA
  CTTATTAAAA TTTTTCTTTC TTTTCGAAAG ATGACTTCAG ACGTGTTCTG AAAGTGCAAA
  TTTGGATAAA ATGAAGCAGT TACAATGGAA ATATTAGCCT GTCTTCTGTG CCCCACCCTC
  CAGATAGTCG CTTTTCAGTC GACCTAAGCG GGTCCCATGG CTCCTGATGG TATGTGCCAG
  S
  AGCTCGTATT TGTCTCTGAG CCCCACAGAG ATGTCCAGTG TCTCCTTCAG CAAGGACCTG
  GTGTGGACCA GCATCCCCAG GAAGTCCTCA TTGAGTCTGC TTTCCTGCCG GCTATCCTGC
  TCTTGGCCCT GCTTGAACTT GCTTTCCAGC TCAGTGAGGG ACTTGTCAGA GTTGGAGTAG
  GCATCCCCGA TCTGGTGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355239507	MGP_WTSI_2_110202386	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252020131					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355239507	MGP_WTSI_2_110202386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110192574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	384 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	within coordinates
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates
Tssr25605	transcription start site region 25605	675 bp downstream
Tssr25606	transcription start site region 25606	726 bp downstream
Tssr25607	transcription start site region 25607	756 bp downstream
Tssr25608	transcription start site region 25608	863 bp downstream
Tssr25609	transcription start site region 25609	886 bp downstream
Tssr25610	transcription start site region 25610	906 bp downstream
Tssr25611	transcription start site region 25611	928 bp downstream