rs252023966 SNP Detail

Summary

• ID
  rs252023966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96183134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGGGTC GCCTTGGGCC
  GCCACCGCGG GCATCGCCGA TTCCGCCGCG GTCCTGGAGC CGGAAGGCCC TCCGCGGTCC
  CCGCGGGCGA GCGCGCACGA CGACGGCGGC GGGCCCTCCC GGTCCTCGTC CCTCCGGATC
  CGGGGCCCGC GGTCACCCCG CCGCGAGTCC AGTCCAGCCC ACCCCGCCTC TGCCTTCAGC
  W
  ACCCTTCCCG TGGCGCGCGG CCTCGCTCGG AGAAGACGGA AGAGGACAGG GCGCGCCGGG
  CCAGGAGTCG CCGACGTCCT TGGCAACGCG GTCCTTCCCC CCCCCCCACA CCCCACGCGG
  GCTTCCCCCC CGGGTCCGCT GCATCCTCGG CGGAGGTATT CCACGGTGAC GGGTCTCTCG
  CCTCGCGCAC AAGATGGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085930	MGP_WTSI_15_96115684	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252023966					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085930	MGP_WTSI_15_96115684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96183134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	1036 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	within coordinates
Rr369997	regulatory region 369997	880 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508521	regulatory region 508521	1679 bp distal
Rr508522	regulatory region 508522	1155 bp distal
Rr508523	regulatory region 508523	268 bp distal
Rr508524	regulatory region 508524	324 bp proximal
Rr508525	regulatory region 508525	442 bp proximal
Rr508526	regulatory region 508526	1432 bp proximal
Rr508527	regulatory region 508527	1681 bp proximal
Rr508528	regulatory region 508528	1775 bp proximal
Tssr132814	transcription start site region 132814	752 bp upstream
Tssr132815	transcription start site region 132815	1503 bp upstream
Tssr132816	transcription start site region 132816	1536 bp upstream
Tssr132817	transcription start site region 132817	1607 bp upstream
Tssr132818	transcription start site region 132818	1677 bp upstream
Tssr132819	transcription start site region 132819	1995 bp upstream
Tssr136021	transcription start site region 136021	238 bp downstream
Tssr136022	transcription start site region 136022	456 bp downstream
Tssr136023	transcription start site region 136023	632 bp downstream