rs252041598 SNP Detail

Summary

• ID
  rs252041598
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:17941227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTCCA TTCATCAGGT
  TTTTACACTC ACTCTTTCCA TAGCTTCTTC AATACTGTTT CCTGAGCCTT AAAGTAGGTA
  GGGATCCTAT ACAAAACAAA AAACTGTATG ATATTTATAG AGAAGCCAGT GTTAACCTGT
  ACTTAAGTTT CACATTTGTA ATGAAATAGT AACCGGGCCT CCACAAATTC CATGGGAATC
  M
  CAGACTAACC ATTTGGTTTT CCTCTGCCTC ATTTCCTCCT CCTTCTTGTG CTCATCCCCA
  TTATCCTCAT CATTGTCGTC GTCGTCCTCC TCCTCCTTCC CCCCTCCCTC CTCCCACTTC
  TTTTTCTCCT CCTTCCTCTT CTTCTCCTCC TCCAATTTCT TCTTATTCTC CTTGTCCCCC
  TCCCCTCCTC CTCCTCCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss390179796	MGP_WTSI_14_4631585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	C	C	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs252041598					SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	C	C	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390179796	MGP_WTSI_14_4631585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:17941227 () rs orientation: forward

Symbol	Name	Function Class
Gm17074	predicted gene 17074	206 bp downstream