rs252059399 SNP Detail

Summary

• ID
  rs252059399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTAGC TGATAAACCT
  GGGTAATGAG GTGTCCGCTT TCAGTTTCCA TTCTGTACGC GACTATACTG CTTGTGTGAG
  CCCTAACAGA CAGAATCAGC TCAGAACAAA GGGTCTGGCT ATCTCCCAGG GATGAACACG
  CACGCCGACT GAGCTTTTGG GGTGTTGAAA AGTCAACGCC TTCGCACAGA ACTCTCCACC
  Y
  CAACCTAGAA ATAACTGGCG TTCTGTTTTA TGTCAGTCCG GACACGCAAG CACTGCTCCT
  TTTGCGGGCC CCGTAAGCAT CCCCCCAGGC GGGATAGGGA TCCCCGGCCT ATGGACTGCG
  CTTTCTCAGC TGGCATCCAG CTGCCTTGGC ACCCAGTCCG GGGCCACTCT GCCTACAGAC
  CCTAGCAACC ACTCACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668099	MGP_WTSI_19_6046264	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252059399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668099	MGP_WTSI_19_6046264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1442 bp upstream
Gm59262	predicted gene, 59262	within coordinates
Rr370438	regulatory region 370438	44 bp upstream
Rr405816	regulatory region 405816	1783 bp downstream
Rr405817	regulatory region 405817	240 bp downstream
Rr543275	regulatory region 543275	1824 bp distal
Rr543276	regulatory region 543276	1960 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	184 bp distal
Rr543279	regulatory region 543279	409 bp proximal
Rr543280	regulatory region 543280	748 bp proximal
Rr543281	regulatory region 543281	851 bp proximal
Rr543282	regulatory region 543282	1044 bp proximal
Rr543283	regulatory region 543283	1107 bp proximal
Rr543284	regulatory region 543284	1155 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	312 bp upstream
Tssr154538	transcription start site region 154538	151 bp downstream
Tssr154539	transcription start site region 154539	365 bp upstream
Tssr154540	transcription start site region 154540	757 bp upstream
Tssr154541	transcription start site region 154541	791 bp upstream
Tssr154542	transcription start site region 154542	817 bp upstream
Tssr157816	transcription start site region 157816	1363 bp upstream
Tssr157817	transcription start site region 157817	684 bp downstream
Tssr157818	transcription start site region 157818	1146 bp downstream