rs252059563 SNP Detail

Summary

• ID
  rs252059563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80308219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT GCTTGGTGCT AGCGGTACTC
  Y
  CTGGGCTCAG TAAAGGAGGG TGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324110782	CHEV_12_81362432	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252059563					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80308219 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	1074 bp upstream
Cpgi4813	CpG island 4813	393 bp distal
Gm47766	predicted gene, 47766	within coordinates
Rr468867	regulatory region 468867	1365 bp distal
Rr468868	regulatory region 468868	1677 bp distal
Rr468869	regulatory region 468869	584 bp distal
Tssr116876	transcription start site region 116876	1236 bp upstream
Tssr116877	transcription start site region 116877	1120 bp upstream
Tssr116878	transcription start site region 116878	1093 bp upstream
Tssr116879	transcription start site region 116879	1074 bp upstream
Tssr116880	transcription start site region 116880	1045 bp upstream
Tssr116881	transcription start site region 116881	940 bp upstream
Tssr116882	transcription start site region 116882	902 bp upstream