rs252059826 SNP Detail

Summary

• ID
  rs252059826
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33199133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGCCGG CGAGCTCTGG
  ATTCATGAAT GAAAGACACA CACGCTGCAT TACTTTCAGT ATGCCTTACT AGTTTAATGG
  CTGGGCACTT CCGGACGTCC CCCAAGCTAG CACACATTCC CCTCCAATAT TCCAGAGTTA
  ACACTTTCTA AGTCTGTATT TTATCTTTGC CGCCCTTTTT CCTTCTGGGC AGGCTTCCCA
  K
  GCGGCTACTT TCCCTCTGCA CCTAGATTTC GGTCGTCTCA CCCTCCTGCC CCTTCACAGT
  GTGGTCCATC CTCTGACCTT CTCATGGCGA ATCCTTCTTC TCTCCCAATC CCCTGCCCCC
  GCCTCCTTTG TTTCTTGCCC AGGAATCCTA AAAGTCCTGC CTCTGTCCCC TTGCCCAGCC
  ATTGGCCTTT GGCAACTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357482748	MGP_WTSI_3_33043906	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252059826					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357482748	MGP_WTSI_3_33043906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33199133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13064	CpG island 13064	1357 bp distal
Pex5l	peroxisomal biogenesis factor 5-like	1737 bp upstream
Rr575054	regulatory region 575054	1913 bp distal
Rr575055	regulatory region 575055	1412 bp distal
Tssr32953	transcription start site region 32953	1984 bp upstream
Tssr32954	transcription start site region 32954	1960 bp upstream
Tssr32955	transcription start site region 32955	1898 bp upstream
Tssr32956	transcription start site region 32956	1825 bp upstream
Tssr32957	transcription start site region 32957	1798 bp upstream
Tssr32958	transcription start site region 32958	1764 bp upstream
Tssr32959	transcription start site region 32959	1718 bp upstream
Tssr32960	transcription start site region 32960	1692 bp upstream
Tssr32961	transcription start site region 32961	1672 bp upstream