rs252064452 SNP Detail

Summary

• ID
  rs252064452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51728641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACAACT GTCATTCGGT
  TGTAACCCCT CCTCTCCTGA GCCTCTAAAA GCCAGACCAC GCCAAGCTGT CCCATACCCC
  CATTCCGGCC CCGTTTCTCA GCACTCAGGT CTCTCGTCGG AAAACAGGGA AGGCTGCGGT
  GTCTTTCGAG CAAAAGTGAA GATGAAGGAG AAGGGCGCCG AGGGGAGAGC GCGGTCAGCC
  Y
  GCGCCTGGGG AAGGCGGCAG GAAGCGCGCC CGGCAGGGAT CAGCCTCACA CGTGGGCCTG
  TGGCCGCAAC CCGCACTCAC CAGGCCGTCG ATCTGCACCT GCTTCACGGC CGAATCTCCG
  GAGCCGCCTT TGCCTTTGCC CTTCCCCACC GCGCCGCCAG CAGAACCGGA GGAGGTGGCG
  GTAGAGCCGG TGCCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324965542	CHEV_15_51696791	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252064452					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51728641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	within coordinates
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	200 bp upstream
Tssr134286	transcription start site region 134286	203 bp downstream
Tssr134287	transcription start site region 134287	253 bp downstream