rs252069390 SNP Detail

Summary

• ID
  rs252069390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAAGTGG GGGGTTGCTC
  CCTTCCGCCT CCCCAGGCTG CCAGAGGATG CAGGTGCTGC TTTGAATGCC TGGCAGGCCC
  AGAGATTTAC ACCAGTTGGC CCCAGGCTCC AGATTCCATG GATAGGGGCT CTGCAGACTG
  ACCCCTTCCC AAGTGCCCTT CTCTAACGCT CCTGGGGCCT TATACTCACA CTCATGCCCT
  Y
  CTTTGTGGCA CCATCAAGCA CCCAAGGCCC AGAGGCAACC CCTGTCCTCC AGGGCTGCTG
  TCTTTTCAGA GGTCGTAGAT GTTGGGTCTT TAGCAGGTCA TGCCTGTTAT AACTAAGTAG
  ACATTGTGTT CAGGAGGCAA AGCCAGACTC CCCTGCTCTG GCTTTCCCCT ACACCCTCAC
  ACCCAGGAAC ACTCTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147591	MGP_WTSI_14_55586716	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252069390					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147591	MGP_WTSI_14_55586716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205336 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	879 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	mRNA-UTR
Rr407057	regulatory region 407057	96 bp distal
Rr492378	regulatory region 492378	1285 bp distal
Rr492379	regulatory region 492379	748 bp distal
Rr492380	regulatory region 492380	356 bp proximal
Rr492381	regulatory region 492381	1782 bp proximal
Tssr4419	transcription start site region 4419	1577 bp upstream
Tssr4420	transcription start site region 4420	1464 bp upstream
Tssr4421	transcription start site region 4421	1458 bp upstream
Tssr4422	transcription start site region 4422	1406 bp upstream
Tssr4423	transcription start site region 4423	1380 bp upstream
Tssr4424	transcription start site region 4424	1342 bp upstream
Tssr4425	transcription start site region 4425	1229 bp upstream
Tssr125718	transcription start site region 125718	793 bp upstream
Tssr125719	transcription start site region 125719	872 bp upstream
Tssr125720	transcription start site region 125720	902 bp upstream
Tssr125721	transcription start site region 125721	922 bp upstream
Tssr125722	transcription start site region 125722	1347 bp upstream
Tssr125723	transcription start site region 125723	1416 bp upstream
Tssr125724	transcription start site region 125724	1428 bp upstream
Tssr128740	transcription start site region 128740	1985 bp upstream
Tssr128741	transcription start site region 128741	1912 bp upstream
Tssr128742	transcription start site region 128742	1294 bp upstream
Tssr128743	transcription start site region 128743	1271 bp upstream
Tssr128744	transcription start site region 128744	942 bp upstream
Tssr128745	transcription start site region 128745	657 bp upstream
Tssr128746	transcription start site region 128746	73 bp downstream
Tssr128747	transcription start site region 128747	102 bp downstream
Tssr128748	transcription start site region 128748	121 bp downstream
Tssr128749	transcription start site region 128749	184 bp downstream
Tssr128750	transcription start site region 128750	203 bp downstream
Tssr128751	transcription start site region 128751	220 bp downstream
Tssr128752	transcription start site region 128752	273 bp downstream
Tssr128753	transcription start site region 128753	462 bp downstream
Tssr128754	transcription start site region 128754	541 bp downstream