rs252079717 SNP Detail

Summary

• ID
  rs252079717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATCTAC TGTCACCTCT
  CAATATAGCT CTAGAGTGTG GAGGTGGGCA GGACACAGGG CGGTCAGTTT TTCTGGGCTC
  AGCACTCTCA GTAATATGGT GTCTCCCCAA GGTCGCCAGC CCCCTAGGAT AGTTCACTCC
  CCTTATGGTG GGTGGGGGCA GGAGCATACC CCTCTCTCCA GGGGTCTTAG GTCTTGCATG
  M
  AGTATTCTCC AAGGGACCTG ATTCAACCTT GCATTCCCGT TTGCAGCCAC CTATGCCAAA
  TGGTTGCTCT TTGGGGATAA AGGCCACCTG TCTGCAGCTG TGTCCCTGGA GGTCACTTGA
  GGCTCCTGTG TGCAAGCTCC AGGGTTAGCC CATGGCCTAA TATGTCACTG CCTGGTTCTC
  AAGCTCTTGA GGGCATGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147597	MGP_WTSI_14_55587130	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252079717					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147597	MGP_WTSI_14_55587130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205750 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	465 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1366 bp upstream
Rr407057	regulatory region 407057	510 bp distal
Rr492378	regulatory region 492378	1699 bp distal
Rr492379	regulatory region 492379	1162 bp distal
Rr492380	regulatory region 492380	within coordinates
Rr492381	regulatory region 492381	1368 bp proximal
Tssr4419	transcription start site region 4419	1991 bp upstream
Tssr4420	transcription start site region 4420	1878 bp upstream
Tssr4421	transcription start site region 4421	1872 bp upstream
Tssr4422	transcription start site region 4422	1820 bp upstream
Tssr4423	transcription start site region 4423	1794 bp upstream
Tssr4424	transcription start site region 4424	1756 bp upstream
Tssr4425	transcription start site region 4425	1643 bp upstream
Tssr125718	transcription start site region 125718	379 bp upstream
Tssr125719	transcription start site region 125719	458 bp upstream
Tssr125720	transcription start site region 125720	488 bp upstream
Tssr125721	transcription start site region 125721	508 bp upstream
Tssr125722	transcription start site region 125722	933 bp upstream
Tssr125723	transcription start site region 125723	1002 bp upstream
Tssr125724	transcription start site region 125724	1014 bp upstream
Tssr125725	transcription start site region 125725	1874 bp upstream
Tssr125726	transcription start site region 125726	1899 bp upstream
Tssr125727	transcription start site region 125727	1932 bp upstream
Tssr128742	transcription start site region 128742	1708 bp upstream
Tssr128743	transcription start site region 128743	1685 bp upstream
Tssr128744	transcription start site region 128744	1356 bp upstream
Tssr128745	transcription start site region 128745	1071 bp upstream
Tssr128746	transcription start site region 128746	318 bp upstream
Tssr128747	transcription start site region 128747	294 bp upstream
Tssr128748	transcription start site region 128748	250 bp upstream
Tssr128749	transcription start site region 128749	219 bp upstream
Tssr128750	transcription start site region 128750	197 bp upstream
Tssr128751	transcription start site region 128751	191 bp upstream
Tssr128752	transcription start site region 128752	132 bp upstream
Tssr128753	transcription start site region 128753	48 bp downstream
Tssr128754	transcription start site region 128754	127 bp downstream