rs252082261 SNP Detail

Summary

• ID
  rs252082261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69725477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCGTG CGTGGAACGC
  TTGTTAAAAT ATTTATGCAG AAATCAGGCT CCTGGGGCGA GTCAAAACTA TGGTGGGGGG
  GGGGGGGTAG AAAAAACGTG GTCTCTAAGG TACCTTTTTA GGAATTGACA GCTGTGAGCT
  ATTGGTAGAT TCGGACTTAA CCAATAAACT TGCCTTAGAA CCCAGCAAAC AAGCTTAAGT
  Y
  GCAGCTGGGT TCTCCATTGC CCTGACACTC CAGACTGCAG AGTGTAGTGT GTGTGGCTTT
  GGGGTGCTCA GCCTTAAGGA AGGGACGCCT GGCTTCATGG CATTTAGCTA GCTCGCTTTT
  GTCCACGCAG CCGGCTGCGG CGTGGCGAGG TGAAGTTCAC CGGCGGCGGC CACCCCTCTG
  CCCCGGGTCT GAGAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401094985	MGP_WTSI_18_69752060	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252082261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401094985	MGP_WTSI_18_69752060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69725477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	within coordinates
Cpgi10193	CpG island 10193	812 bp proximal
Rr405727	regulatory region 405727	861 bp upstream
Rr540216	regulatory region 540216	1389 bp distal
Rr540217	regulatory region 540217	909 bp distal
Rr540218	regulatory region 540218	92 bp proximal
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	395 bp upstream
Tssr151834	transcription start site region 151834	538 bp upstream
Tssr151835	transcription start site region 151835	548 bp upstream
Tssr151836	transcription start site region 151836	578 bp upstream
Tssr151837	transcription start site region 151837	804 bp upstream
Tssr151838	transcription start site region 151838	852 bp upstream
Tssr151839	transcription start site region 151839	955 bp upstream
Tssr151840	transcription start site region 151840	1048 bp upstream
Tssr151841	transcription start site region 151841	1085 bp upstream
Tssr151842	transcription start site region 151842	1108 bp upstream
Tssr151843	transcription start site region 151843	1140 bp upstream
Tssr151844	transcription start site region 151844	1177 bp upstream
Tssr151845	transcription start site region 151845	1218 bp upstream
Tssr153821	transcription start site region 153821	886 bp downstream