rs252085974 SNP Detail

Summary

• ID
  rs252085974
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155868584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCAAGA CCTTGGAGGA
  CTCAGCTGAT CCCGCAAGTT GAGCCATGAC GTCTGGTTGC TACTGGCTAC ACCGGAGCTT
  CTAGAATTAT GCGTGGTTGG GGGGGGGGAT TCAGAGATAG CTGCCAAGTC GGCTGCTGAC
  CACAGAATTG GGTGGAAGAC ATAATATGCT TTTCTGCTTT TCTTGAAGGG ACACCCTTTC
  K
  CCCTCTTCTG AGGGACCCTG TTGCCATCTC CTGGCGACTT CGAGCACTGC TCTCAGAGCC
  CCAAAGCAGC CGCCCGAGTC ATCCACTTTA CGGGGGTCGA GGGACCTGGG AGGCTCTTGA
  CGCGCAGAGA CCTTGAGGCG TCAGACCCAA GCACAGAGTT GTTTGTCCTC GTCCGGGTGG
  CCGTCGGCCA GATCTCCGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442825	CHEV_4_155158236	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252085974					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155868584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	within coordinates
Rr606569	regulatory region 606569	18 bp proximal
Rr606570	regulatory region 606570	518 bp proximal
Rr606571	regulatory region 606571	1855 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	97 bp upstream
Tssr44972	transcription start site region 44972	771 bp downstream
Tssr44973	transcription start site region 44973	809 bp downstream
Tssr44974	transcription start site region 44974	881 bp downstream
Tssr44975	transcription start site region 44975	895 bp downstream
Tssr44976	transcription start site region 44976	922 bp downstream
Tssr44977	transcription start site region 44977	932 bp downstream
Tssr44978	transcription start site region 44978	1737 bp downstream
Tssr44979	transcription start site region 44979	1756 bp downstream