rs252086727 SNP Detail

Summary

• ID
  rs252086727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGAACT TTCTAACAAA
  ATGTGTTTCT CCGAAGGGGC TTTATTGAAT TTGTCACCCT AGATACTCTA ATGTGACAAT
  GTTTTGGCGT GGTTTTCTGA AATAATTGCA AATTCCTTCC TGTCTAAGAT ATATTGTTTG
  GACTGTCATC TCTCATTTAA GCCTCTTGAA ATGTGTGTGC ATTAGGACAA AGAGGCAGCA
  Y
  GTGGAGTTAT AATGGAGCAA TTGAAATGCA GAATCGGGAA GTGTATTGCC AGCCACAGGG
  TTGGCATCTG ACTTACAGAA GAGGGTGACT CTAGGAACTG GTCACGATAT AAAGAAAAGC
  TGAAATTTCA AGAATATCGC ACACACAAAA AGAAATGTTA CTATTTTTAA AAATCCTTCA
  GTCTAGTAAC CATAAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458409	CHEV_10_109341510	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252086727					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740315 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	Intron
Rr438756	regulatory region 438756	306 bp distal
Rr438757	regulatory region 438757	1625 bp proximal
Tssr99236	transcription start site region 99236	625 bp upstream
Tssr99237	transcription start site region 99237	609 bp upstream
Tssr99238	transcription start site region 99238	583 bp upstream
Tssr99239	transcription start site region 99239	554 bp upstream
Tssr99240	transcription start site region 99240	527 bp upstream
Tssr99241	transcription start site region 99241	488 bp upstream
Tssr99242	transcription start site region 99242	432 bp upstream