rs252088853 SNP Detail

Summary

• ID
  rs252088853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGAAC GACAACTCCC
  TGGTCTACTT TGCCTACTAC CATGGCCTTC TGGGGAACAG GTAAAGGAAG AGGGACCGTT
  GGGCAATGTC TAAGGCGGGG CAGGTCATAC GATCTCAGCA CAGGATTCCC ACTCTGGTTT
  ATGTGTAGGC CGGAGCTGGA ATTGACCAAA GGGCTTGATG CTTTAAAGGC CAAGCCTAGG
  R
  TTTAAAGAAA CTAAGGCAGC TAGACATGGT GATACACACC TGTAACCTGG CACTTGAAAA
  CGGGCAGAAG AATCCTGACT TTTAGGCTAG CCTGTGCTAC ATAGTGAGTT TAGTATTTGA
  GCCCAGGTTA TGTAAAAAAA AAAACTCTCA AGAACATTTT TTTTCTACTT TTTAAAAAAG
  GCACTGGGAG GGCTGGCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441834	MGP_WTSI_2_164661362	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252088853					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441834	MGP_WTSI_2_164661362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1445 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1991 bp downstream
Rr569730	regulatory region 569730	1916 bp distal
Tssr21662	transcription start site region 21662	1814 bp downstream
Tssr21663	transcription start site region 21663	1765 bp downstream
Tssr21664	transcription start site region 21664	1724 bp downstream
Tssr21665	transcription start site region 21665	978 bp downstream
Tssr21666	transcription start site region 21666	663 bp downstream
Tssr21667	transcription start site region 21667	582 bp downstream
Tssr21668	transcription start site region 21668	211 bp downstream
Tssr21669	transcription start site region 21669	170 bp downstream
Tssr21670	transcription start site region 21670	549 bp upstream
Tssr21671	transcription start site region 21671	1138 bp upstream
Tssr21672	transcription start site region 21672	1339 bp upstream
Tssr21673	transcription start site region 21673	1506 bp upstream
Tssr27547	transcription start site region 27547	1541 bp downstream
Tssr27548	transcription start site region 27548	1591 bp downstream