rs252100680 SNP Detail

Summary

• ID
  rs252100680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91736855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTATCCT GAAGACCATG
  TTTTTCAACC TATGTGGAAC TAGTGACCCC ATGATATATA CCCACTCCTT TGCCTTGCTA
  AACTGAACCT GTGACATAGG ATTGCCCCAT GAAAATGTGT CTTCCCAGAT ACAATGATGC
  CTCCCCTTGC ACATGATGCA TGCTTGCACT TCTCACGGGC AGCCTTGAGC CCTTCTGTCC
  W
  GGTGCTAGCA AGAAATTATC TTGGCAGCCG TTTTGTTTTA TTTTGGTCAA TCTTAACCCT
  TCCCTCAAAA GTCAATGAGG TGGTGCCCTC TGAAACCCTG ACTTTCAGAG CAGGAGCTGG
  CTGGCCACTT CTAGTAGAGC TTGCTCTAAG CAGACAGTCA TGGAAATGGT TTCCCCTCAG
  GTCTGACAGC TCCTTTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190341	MGP_WTSI_6_91709868	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252100680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190341	MGP_WTSI_6_91709868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91736855 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1635 bp downstream
Rr141761	regulatory region 141761	1455 bp distal
Rr379752	regulatory region 379752	689 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	811 bp downstream
Tssr57754	transcription start site region 57754	1949 bp downstream
Tssr57755	transcription start site region 57755	1853 bp downstream
Tssr57756	transcription start site region 57756	1813 bp downstream
Tssr57757	transcription start site region 57757	1788 bp downstream
Tssr57758	transcription start site region 57758	1752 bp downstream
Tssr57759	transcription start site region 57759	1528 bp downstream
Tssr57760	transcription start site region 57760	1472 bp downstream
Tssr57761	transcription start site region 57761	1455 bp downstream
Tssr57762	transcription start site region 57762	1414 bp downstream
Tssr57763	transcription start site region 57763	1390 bp downstream
Tssr57764	transcription start site region 57764	1366 bp downstream
Tssr57765	transcription start site region 57765	1333 bp downstream
Tssr57766	transcription start site region 57766	1307 bp downstream
Tssr57767	transcription start site region 57767	1236 bp downstream
Tssr57768	transcription start site region 57768	1226 bp downstream
Tssr57769	transcription start site region 57769	1026 bp downstream
Tssr57770	transcription start site region 57770	915 bp downstream
Tssr62095	transcription start site region 62095	1522 bp upstream
Tssr62096	transcription start site region 62096	1240 bp upstream
Tssr62097	transcription start site region 62097	1033 bp upstream