rs252100742 SNP Detail

Summary

• ID
  rs252100742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGAGAC TGGAAGGCGC
  CTGCGCGACT CGACTCGGAG ACTGGAAGGC GCCTGCGCGA CTCGACTCGG AGACTGGAAG
  GCGCCTGCGC GACTCGGAGA CTGGAAGGCT CGGAGGCTGG AAGGCGCCTG CGCGACTCGG
  ACGCTGGAAG GCGCCTGCGC GACTCGGACG CTGGAAGGCG CCTGCGCGAC TCGACTCGGA
  S
  GCTGGAAGGC GCCTGCGCGA CTCGGAGACT GGCGCGGCCG GTTAGGCCTG GTAACGTGGG
  AGGAGCCCCG AGGCGCACCG TGGCTGGGGG TTTCGACTCC CCGGAGCTGA TATCCAGGGC
  GGCTTTGAAG GATAGGGCTG GGCCCAGAAT GATTGACACG TGACCCCGCG CGCCATTCCT
  ATTGGTTGCT TCGCAGAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809039	MGP_WTSI_4_155367065	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	C	G	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252100742					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	C	G	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809039	MGP_WTSI_4_155367065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077413 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	307 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606629	regulatory region 606629	1594 bp distal
Rr606630	regulatory region 606630	361 bp distal
Rr606631	regulatory region 606631	within coordinates
Rr606632	regulatory region 606632	258 bp distal
Rr606633	regulatory region 606633	within coordinates
Rr606634	regulatory region 606634	297 bp proximal
Rr606635	regulatory region 606635	432 bp proximal
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	10 bp downstream
Tssr40748	transcription start site region 40748	543 bp downstream
Tssr40749	transcription start site region 40749	187 bp upstream
Tssr40750	transcription start site region 40750	274 bp upstream
Tssr40751	transcription start site region 40751	349 bp upstream
Tssr40752	transcription start site region 40752	492 bp upstream
Tssr44987	transcription start site region 44987	614 bp upstream
Tssr44988	transcription start site region 44988	282 bp upstream