rs252102316 SNP Detail

Summary

• ID
  rs252102316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCCCCC CCCCCACCCG
  CAGGCTCGGA GACCAGTCTA TTAGCATGTT CGGTCCCATA ATGCTTTGCT TCATTTCCGC
  TGCTTAAATC TTAAATAAAA CCAGCACGCC TCTCCGTTCT ATCACATAGA GAATGCCAAG
  AGAATGTCCT TGCTGCTCTC ATTTCCAGGG TAGCGATAAT GGAGGGTTTT CCCGTTTGCT
  Y
  GAAACCCCCT TTTTGAAATA GGGTCCTCGT CTGCTAGGAA CGTTGCGCTG GGGCGGGAGT
  TCTTTAGCTT TGCGCAGTGG CAGTATCGTA GCCAATGAGG TTTATCCGAG GCGCGATTAT
  TGCTAATTGA AAACTTTTCC CAATACCCCG CCGTGACGAC TTGCAATATA GTCGGCATTG
  GCAATTTTTG ACAGTCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366357732	MGP_WTSI_5_115939402	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252102316					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366357732	MGP_WTSI_5_115939402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	428 bp proximal
Gm24265	predicted gene, 24265	66 bp upstream
Gm24407	predicted gene, 24407	861 bp upstream
Gm57305	predicted gene, 57305	240 bp downstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1052 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	71 bp downstream
Tssr48293	transcription start site region 48293	63 bp upstream
Tssr48294	transcription start site region 48294	138 bp upstream
Tssr48295	transcription start site region 48295	838 bp upstream
Tssr48296	transcription start site region 48296	933 bp upstream
Tssr52808	transcription start site region 52808	461 bp upstream
Tssr52809	transcription start site region 52809	444 bp upstream
Tssr52810	transcription start site region 52810	160 bp downstream
Tssr52811	transcription start site region 52811	437 bp downstream
Tssr52812	transcription start site region 52812	550 bp downstream
Tssr52813	transcription start site region 52813	562 bp downstream
Tssr52814	transcription start site region 52814	598 bp downstream
Tssr52815	transcription start site region 52815	792 bp downstream
Tssr52816	transcription start site region 52816	951 bp downstream