rs252103676 SNP Detail

Summary

• ID
  rs252103676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101170059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGTGTA GCTTCCACCT
  GCTTTCTGGA AAGGGTGGGG TGAGGAGGGC CTTGTGGGGT CCCCATCATG GTCTGAGTTC
  TCTGTCTCTG ACTTCTCAGA AGTGGGGTGT ATAGTGTGCC CTGAAGACCC TCCTTCTCCA
  GGTCTCCTTT CTCAATACTG CCCGTCTCTC TGCAGTTGTA CGGACAGACA GCCTAAAAGG
  R
  CGGCGGGGCC GGCTACCTTC AAAACCCAAG CAGCCTCCAG ATGCCTCCCC TACCAATCTT
  CTCACTTCCC TCATCCGGGC ACACTTGGAC TCCGGGCCTA GCACTGCCAA ATTGGACTAT
  TCCAAGGTGA GGTCTTGCCC GCCCATCTGC CCTGCCCTGA GAACATATGC AATGCCTTTG
  TGCCTGTTAG GAAAGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395193009	MGP_WTSI_15_101102609	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252103676					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395193009	MGP_WTSI_15_101102609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101170059 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133228	transcription start site region 133228	1991 bp downstream
Tssr133229	transcription start site region 133229	1953 bp downstream
Tssr133230	transcription start site region 133230	1894 bp downstream
Tssr133231	transcription start site region 133231	1868 bp downstream
Tssr133232	transcription start site region 133232	1841 bp downstream
Tssr133233	transcription start site region 133233	1820 bp downstream
Tssr133234	transcription start site region 133234	1794 bp downstream
Tssr133235	transcription start site region 133235	1752 bp downstream
Tssr133236	transcription start site region 133236	1713 bp downstream
Tssr133237	transcription start site region 133237	1682 bp downstream
Tssr133238	transcription start site region 133238	1664 bp downstream
Tssr133239	transcription start site region 133239	1601 bp downstream
Tssr133240	transcription start site region 133240	1533 bp downstream
Tssr133241	transcription start site region 133241	1524 bp downstream
Tssr133242	transcription start site region 133242	1512 bp downstream
Tssr133243	transcription start site region 133243	1491 bp downstream
Tssr133244	transcription start site region 133244	1461 bp downstream
Tssr133245	transcription start site region 133245	1415 bp downstream
Tssr133246	transcription start site region 133246	1385 bp downstream
Tssr133247	transcription start site region 133247	1304 bp downstream
Tssr133248	transcription start site region 133248	1286 bp downstream
Tssr133249	transcription start site region 133249	429 bp downstream
Tssr133250	transcription start site region 133250	399 bp downstream
Tssr133251	transcription start site region 133251	365 bp downstream
Tssr133252	transcription start site region 133252	22 bp downstream
Tssr133253	transcription start site region 133253	12 bp downstream
Tssr133254	transcription start site region 133254	within coordinates
Tssr133255	transcription start site region 133255	32 bp upstream
Tssr133256	transcription start site region 133256	73 bp upstream
Tssr133257	transcription start site region 133257	91 bp upstream
Tssr133258	transcription start site region 133258	543 bp upstream
Tssr133259	transcription start site region 133259	560 bp upstream
Tssr133260	transcription start site region 133260	578 bp upstream
Tssr133261	transcription start site region 133261	588 bp upstream
Tssr133262	transcription start site region 133262	599 bp upstream
Tssr133263	transcription start site region 133263	620 bp upstream
Tssr133264	transcription start site region 133264	639 bp upstream
Tssr133265	transcription start site region 133265	848 bp upstream
Tssr133266	transcription start site region 133266	873 bp upstream
Tssr133267	transcription start site region 133267	914 bp upstream
Tssr133268	transcription start site region 133268	961 bp upstream
Tssr133269	transcription start site region 133269	1133 bp upstream
Tssr133270	transcription start site region 133270	1795 bp upstream
Tssr133271	transcription start site region 133271	1844 bp upstream
Tssr133272	transcription start site region 133272	1904 bp upstream
Tssr133273	transcription start site region 133273	1943 bp upstream
Tssr136545	transcription start site region 136545	1868 bp upstream
Tssr136546	transcription start site region 136546	1747 bp upstream
Tssr136547	transcription start site region 136547	1672 bp upstream
Tssr136548	transcription start site region 136548	1655 bp upstream
Tssr136549	transcription start site region 136549	1630 bp upstream
Tssr136550	transcription start site region 136550	1514 bp upstream
Tssr136551	transcription start site region 136551	1409 bp upstream