rs252103923 SNP Detail

Summary

• ID
  rs252103923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105439233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAACTAA AAAAAGTGAC
  TCTAATGATG AAGAAGTCAT TGCTTTTGAG GAATATGTTA AGTCTATGAA AGTTAATATC
  TTAAGAGTAT GGGGAAGGGC TAGAGAGATG GCTCAGTGGT TAAGAGCCTG GCTGCTCTTC
  CAGAGGCCCT GAGTTCAATT CCCAGCAACC ACATGGTGTC TCACAACCAT TTATAATGGG
  W
  TCTGATGCCA CACACATATA AAATTAATAG ACATTTTAAA AAAGAGTATG GAGAAAAGGA
  TTTACAAGTT AATATTATTT TATTTGATTA TGAATTTAAA TGTATATATT TAAGTCTGTT
  AGATAATAAG TGTAGAATTT TTCTTCATCC TTCATCTCTA CAGGAATTGG GTTTGTTCTC
  TTTTTAGACT TTTACTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370583	CHEV_7_112938540	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252103923					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105439233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	1954 bp distal
Rr652816	regulatory region 652816	1882 bp distal