rs252104770 SNP Detail

Summary

• ID
  rs252104770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105722057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACCATG CCTGTCTTCC
  ATGTGAGTCA GAGGGGAGTT ATGGGGCTAA CAGGAACTTT GGATGGCAAG TCTGCCCTGC
  ACACCTGACC AGAGAGCAGT CAAGCAGTAG AGAAGCCAGA GGAGTAGAGT GGAGCCACGG
  AAATGGCGAC AAACACCATC CTGAGTGCCC CCAAAGAGTT AACTGGTCCA GATGCCTTTG
  W
  AATACCTTGA ATATCATTTT AAATGAAAAG CCTAAGACTA TTTCTTGCCC CTGTTTGGTT
  TTTTAAGACA GGGTCTTCTG AAGCCCAGAT TTGGTCTTCA ATGTGGAATA AACTCCTAGT
  CTTTGTGCTT CCGATTCTCA AACTCTGGAT GGGTGCACCA TCACACCCAG GCTGAAACTG
  CCTTAATTCA TGATGATGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863281	CHEV_3_105617659	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252104770					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105722057 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	826 bp upstream
Rr582787	regulatory region 582787	334 bp proximal
Rr582788	regulatory region 582788	849 bp proximal
Rr582789	regulatory region 582789	1392 bp proximal
Tssr31084	transcription start site region 31084	789 bp upstream