rs252106492 SNP Detail

Summary

• ID
  rs252106492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15654558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTACTTC ACTCACCTTG
  GGCTTATAGC CTCAAGCTCC ACTGTCAGGT GAATCCAGGG TTGTCGCAGC CCACCAAGAC
  AGCATGGATC CAAGGCAGGA CAGGTACCCA AGGGAGGCAG GCAATAGCAG TGCGATGAAG
  GTAAAGAGAG ACAGAGATCC AGATGAGAAC GCAGAGGTAA CAAAGACCCT CAAAAGAGGG
  R
  AAGATGTGCT CATCACACAG AGAGATGTGT GCGACAGTGC GAAGATACAT AGAAAGCCCA
  CCCCAAACAA AAGAGCCAAG ATGGAGAGGC GGGATGGCAA AGAGATCACA GGTTCCACAT
  AGAGATGCCA ATGGGGAGGG AAGCAGGGAA GTAAATTAGG ACAAATGCTG CCTCAGTAGA
  ATCTCACCCA CCCACTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370680960	MGP_WTSI_7_16505982	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252106492					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370680960	MGP_WTSI_7_16505982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15654558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18341	CpG island 18341	1300 bp proximal
Rr155058	regulatory region 155058	1758 bp distal
Rr167058	regulatory region 167058	within coordinates
Rr400109	regulatory region 400109	1189 bp upstream
Selenow	selenoprotein W	within coordinates
Tssr70679	transcription start site region 70679	519 bp upstream
Tssr70680	transcription start site region 70680	34 bp downstream
Tssr70681	transcription start site region 70681	145 bp downstream
Tssr70682	transcription start site region 70682	1669 bp downstream
Tssr70683	transcription start site region 70683	1702 bp downstream
Tssr70684	transcription start site region 70684	1728 bp downstream