rs252107823 SNP Detail

Summary

• ID
  rs252107823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTTCCCT GGATTCTTTG TTCGTGATTC
  CCACTCTCAA CGTGGATGCA AAGTTCCAGG ATGACAGAAA ACGAGTTGGT CTTATTGTAG
  TGGAGCAGTT GACCAGGCAC GGACAGTCGA Gtggatggag gatggatgga tgaatgaatg
  R
  atggatggat ggatggatgg atggatggat agatagatag atagatagat agatgatggg
  tgggtggatg atgggcggat gaatgcatgT GTGCGGTCCC CGTCTGCGCT GCTGACTCTC
  TGGGGCCGCG CCTGGCCACG GTGAGGACGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608374	CHEV_2_165420319	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252107823					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	within coordinates
Eya2	EYA transcriptional coactivator and phosphatase 2	213 bp upstream
Rr569954	regulatory region 569954	865 bp distal
Rr569955	regulatory region 569955	within coordinates
Rr569956	regulatory region 569956	224 bp proximal
Rr569957	regulatory region 569957	395 bp proximal
Rr569958	regulatory region 569958	572 bp proximal
Tssr21727	transcription start site region 21727	190 bp upstream
Tssr21728	transcription start site region 21728	1352 bp upstream