rs252112289 SNP Detail

Summary

• ID
  rs252112289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATGATTT ACATCTAAAG GTAGCCTGGG TTCTTCCCTT
  TATGGTATCG TTTCCAGCGC TTCCAGATTC TCTGTTCCAG GCTCCTTCTC ACCTTCTCTC
  Y
  CCCCCCCAGA CTCCCCCCAC CTCCCGCCCA TTCTGAGCAT CATCCTTATC TTGAGGCTCT
  ACCACCAGTC CTCGACCCTC TGTGTGCACA GCCTGGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J
ss391147614	MGP_WTSI_14_55588005	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J
rs252112289					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147614	MGP_WTSI_14_55588005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206625 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1516 bp downstream
Rr407057	regulatory region 407057	1385 bp distal
Rr492380	regulatory region 492380	363 bp distal
Rr492381	regulatory region 492381	493 bp proximal
Tssr125718	transcription start site region 125718	485 bp downstream
Tssr125719	transcription start site region 125719	393 bp downstream
Tssr125720	transcription start site region 125720	368 bp downstream
Tssr125721	transcription start site region 125721	356 bp downstream
Tssr125722	transcription start site region 125722	58 bp upstream
Tssr125723	transcription start site region 125723	127 bp upstream
Tssr125724	transcription start site region 125724	139 bp upstream
Tssr125725	transcription start site region 125725	999 bp upstream
Tssr125726	transcription start site region 125726	1024 bp upstream
Tssr125727	transcription start site region 125727	1057 bp upstream
Tssr125728	transcription start site region 125728	1865 bp upstream
Tssr128745	transcription start site region 128745	1946 bp upstream
Tssr128746	transcription start site region 128746	1193 bp upstream
Tssr128747	transcription start site region 128747	1169 bp upstream
Tssr128748	transcription start site region 128748	1125 bp upstream
Tssr128749	transcription start site region 128749	1094 bp upstream
Tssr128750	transcription start site region 128750	1072 bp upstream
Tssr128751	transcription start site region 128751	1066 bp upstream
Tssr128752	transcription start site region 128752	1007 bp upstream
Tssr128753	transcription start site region 128753	808 bp upstream
Tssr128754	transcription start site region 128754	738 bp upstream
Tssr128755	transcription start site region 128755	1547 bp downstream
Tssr128756	transcription start site region 128756	1564 bp downstream