rs252115315 SNP Detail

Summary

• ID
  rs252115315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191012090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATGTGC ACCATTGTTA
  CTTACCAATT AATAGTGATA AAAGATGTCC AAGCTATCGC CTTCCCAGAG CTCTTAGAAT
  GCATGGTGAG ATGTTTACTG TTACAGTTTA TATGTATGTA TCTTGGTCAG GGTTTCTATT
  CCTGCACAAA CATCATGACC AAGAAGCAAG TTGGGGAGGA AAGGGTTTAT TCAGCTTACA
  W
  TTCCATAGCA CCAAGGAAGT CAGGACTGGA ACTCAAGCAG GTCAGGAAGC AGGAGCTGAT
  GCAGAGGCCA TGGAGGGATG TTCCTTACTG GATTAAGACA GTAAGTCTTT CTGCACAAGT
  GTAGTACACT GTGTCTGTGC CTGCTGCCTA TGGGATTCAG AAAAGGATCT TGATCCTCTT
  GAGCTGGAGT TATGCATGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352829926	MGP_WTSI_1_193103772	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252115315					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352829926	MGP_WTSI_1_193103772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191012090 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr396719	regulatory region 396719	1938 bp downstream
Rr426096	regulatory region 426096	1547 bp distal
Rr426097	regulatory region 426097	831 bp proximal
Tssr373	transcription start site region 373	934 bp downstream
Tssr10760	transcription start site region 10760	1521 bp upstream
Tssr10761	transcription start site region 10761	1530 bp upstream
Tssr10762	transcription start site region 10762	1560 bp upstream
Tssr10763	transcription start site region 10763	1574 bp upstream
Tssr10764	transcription start site region 10764	1604 bp upstream