rs252116165 SNP Detail

Summary

• ID
  rs252116165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6920901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTAT TTATTCATTT
  ATTTATTGTA TGTGAGTACA CTGTAGCTGT CTTCAGAAGA GGGCATCAGA TCCCATTACA
  GATGGTTGTG AGCCACCATG TGGTTGCTGG GAATTGAACT CAGTACCTCT GGAAGAGGAG
  TCAGTGCTCT TAACCACTGA GCCATCTCTC CAGCCCAAGA AGTGGCCAGT AGGTCCGTTC
  K
  TTCGTTCGTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTTT TTAAAATGAT TATTTTTTGG
  TTTTTCAAGA CAGGGTTTCT CTGTGTAGCT CTGGCTATCT TGGAACTCAC TCCTACAGAA
  AAACCAATAA ATAAATAATA ATAATAAAAA CTAATAAAAA AGGAAGAAGA AAGCTGAAGG
  TTAAAAGAAG GGATGGGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683405	MGP_WTSI_19_7018023	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252116165					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683405	MGP_WTSI_19_7018023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6920901 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	881 bp distal
Gm19053	predicted gene, 19053	1538 bp downstream
Gpr137	G protein-coupled receptor 137	1083 bp upstream
Rr405833	regulatory region 405833	1870 bp downstream
Rr405834	regulatory region 405834	1533 bp downstream
Rr405835	regulatory region 405835	828 bp downstream
Rr543510	regulatory region 543510	1200 bp distal
Rr543511	regulatory region 543511	1648 bp distal
Rr543512	regulatory region 543512	959 bp distal
Tssr154697	transcription start site region 154697	1643 bp downstream
Tssr154698	transcription start site region 154698	1601 bp downstream
Tssr154699	transcription start site region 154699	949 bp downstream
Tssr154700	transcription start site region 154700	926 bp downstream
Tssr154701	transcription start site region 154701	895 bp downstream
Tssr157903	transcription start site region 157903	1703 bp upstream
Tssr157904	transcription start site region 157904	1090 bp upstream