rs252138441 SNP Detail

Summary

• ID
  rs252138441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79755986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGGGTG CGGGGTTGGG
  GCGCGCGCAG GGCCGAGGCC GTGACATGGC GATTGGGGGT GTCGGGGCGA GGGCGCGCGG
  CCGCCCGCCG GGCTGGGGAC CGGAGAGGTC GGTCTCCGGC TAAAGGTTGC GCCGGGGTGG
  GTCGGCCCCG GAGCCGCGGG CAGCTGGAGC TGGAGGCGGA GGTGGAGGCG GTGGCGGAGG
  R
  GAAGGCAGGG GCGGTCGAGG AGGGTGTGGG GGCGCCGGGG GGCGCGGGTG GCCGATCGGG
  GGGCGAGGCC GGGCAGCCGA GCGGATGTGG GGTGCGGGAG CCGCGCCGAG GCTGAGGCGA
  GGCAGCCAGG GCGGCGCGCG GCGCGCGAGG TCCCTGCAGA GCCGAGGGGA GGGCGGAGCA
  GGGCTCCCGG CCGCAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375274858	MGP_WTSI_8_81553256	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252138441					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274858	MGP_WTSI_8_81553256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79755986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	928 bp distal
Cpgi20620	CpG island 20620	within coordinates
Rr186908	regulatory region 186908	within coordinates
Rr400985	regulatory region 400985	750 bp downstream
Tssr2612	transcription start site region 2612	991 bp downstream
Tssr78123	transcription start site region 78123	1379 bp downstream
Tssr78124	transcription start site region 78124	1120 bp downstream
Tssr78125	transcription start site region 78125	1048 bp downstream
Tssr78126	transcription start site region 78126	1007 bp downstream
Tssr78127	transcription start site region 78127	744 bp downstream
Tssr78128	transcription start site region 78128	703 bp downstream
Zfp827	zinc finger protein 827	within coordinates