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rs252146108 SNP Detail
Summary
  • ID
    rs252146108
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94841350 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTGGACCTC CCAGTGGCGG
TTATGACTTC AGCTTCCTGC CTCAGCCACC TCAAGAGAAG TCTCAAGATG GTGGCCGCTA
CTACCGGGCC GATGATGCTA ACGTGGTTCG TGACCGTGAC CTTGAGGTGG ACACCACCCT
CAAGAGCCTG AGTCAGCAGA TTGAGAACAT CCGCAGCCCC GAAGGCAGCC GCAAGAACCC
Y
GCCCGCACAT GCCGCGACCT CAAGATGTGC CACTCTGACT GGAAGAGCGG TAAGGATTAA
CCCCAGCCAC CTCCCCCCCC CCCTTTAGCC TACCATGCTG CTTCCCCCAT GTTTTCATAC
ATTCCACTTT CCATATGGTG CTGGCTGCCT ACTCCTCCTG ACTGCTTTGC CTTGCCCACT
TCAGGAGAGT ACTGGATCGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336257 MGP_WTSI_11_94811838 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252146108 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336257 MGP_WTSI_11_94811838 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94841350 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Rr454892 regulatory region 454892 1532 bp proximal
Tssr3647 transcription start site region 3647 1457 bp upstream
Tssr104258 transcription start site region 104258 1953 bp downstream
Tssr104259 transcription start site region 104259 1791 bp downstream
Tssr104260 transcription start site region 104260 1739 bp downstream
Tssr104261 transcription start site region 104261 1090 bp downstream
Tssr104262 transcription start site region 104262 350 bp downstream
Tssr104263 transcription start site region 104263 217 bp downstream
Tssr104264 transcription start site region 104264 195 bp downstream
Tssr104265 transcription start site region 104265 169 bp downstream
Tssr104266 transcription start site region 104266 157 bp downstream
Tssr104267 transcription start site region 104267 90 bp downstream
Tssr104268 transcription start site region 104268 62 bp downstream
Tssr104269 transcription start site region 104269 49 bp downstream
Tssr104270 transcription start site region 104270 28 bp downstream
Tssr104271 transcription start site region 104271 within coordinates
Tssr104272 transcription start site region 104272 179 bp upstream
Tssr104273 transcription start site region 104273 225 bp upstream
Tssr104274 transcription start site region 104274 325 bp upstream
Tssr104275 transcription start site region 104275 337 bp upstream
Tssr104276 transcription start site region 104276 347 bp upstream
Tssr104277 transcription start site region 104277 581 bp upstream
Tssr104278 transcription start site region 104278 633 bp upstream
Tssr104279 transcription start site region 104279 650 bp upstream
Tssr104280 transcription start site region 104280 705 bp upstream
Tssr104281 transcription start site region 104281 719 bp upstream
Tssr104282 transcription start site region 104282 765 bp upstream
Tssr104283 transcription start site region 104283 937 bp upstream
Tssr104284 transcription start site region 104284 962 bp upstream
Tssr104285 transcription start site region 104285 1031 bp upstream
Tssr104286 transcription start site region 104286 1053 bp upstream
Tssr104287 transcription start site region 104287 1080 bp upstream
Tssr104288 transcription start site region 104288 1102 bp upstream
Tssr104289 transcription start site region 104289 1143 bp upstream
Tssr104290 transcription start site region 104290 1189 bp upstream
Tssr104291 transcription start site region 104291 1198 bp upstream
Tssr104292 transcription start site region 104292 1236 bp upstream
Tssr104293 transcription start site region 104293 1384 bp upstream
Tssr104294 transcription start site region 104294 1421 bp upstream
Tssr104295 transcription start site region 104295 1479 bp upstream
Tssr104296 transcription start site region 104296 1498 bp upstream
Tssr104297 transcription start site region 104297 1531 bp upstream
Tssr104298 transcription start site region 104298 1569 bp upstream
Tssr104299 transcription start site region 104299 1597 bp upstream
Tssr104300 transcription start site region 104300 1617 bp upstream
Tssr104301 transcription start site region 104301 1741 bp upstream
Tssr104302 transcription start site region 104302 1753 bp upstream
Tssr104303 transcription start site region 104303 1767 bp upstream
Tssr104304 transcription start site region 104304 1806 bp upstream
Tssr104305 transcription start site region 104305 1831 bp upstream
Tssr104306 transcription start site region 104306 1846 bp upstream
Tssr104307 transcription start site region 104307 1862 bp upstream
Tssr104308 transcription start site region 104308 1932 bp upstream
Tssr104309 transcription start site region 104309 1952 bp upstream
Tssr104310 transcription start site region 104310 1997 bp upstream
Tssr110222 transcription start site region 110222 318 bp downstream
Tssr110223 transcription start site region 110223 687 bp downstream
Tssr110224 transcription start site region 110224 772 bp downstream
Tssr110225 transcription start site region 110225 985 bp downstream
Tssr110226 transcription start site region 110226 1018 bp downstream
Tssr110227 transcription start site region 110227 1057 bp downstream
Tssr110228 transcription start site region 110228 1069 bp downstream
Tssr110229 transcription start site region 110229 1129 bp downstream
Tssr110230 transcription start site region 110230 1160 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory