rs252146197 SNP Detail

Summary

• ID
  rs252146197
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCATGTG AGTCCCAGGG
  ACGGAACTCG GGTCAAACTA TTTGGCAGCC TTTACCCACT GCTCAGTCAT TGTATTTTCT
  TTTAGAAAAA AACCCTGACT TCACCTCTTT TACTCTCCCT ACCCCAGATT CTTAGCCATA
  TGATCGTTCT GTGTGTCCCA CCTCCAAGGT TTCTGTTTCC AGCCATCCCT GCCGACCTCT
  W
  AGGTTTTGCC CTTGCTCTGA CTTTCTTGCA GTCCTTGCTC TCTTGCTGAC CCCACTAGAT
  AATTATTTCT TGATCCTGTC CAAAATAGGA CATTTATATT CCATTTAGTA AAAGAGTCCC
  TCTTGTCCTT CACCGGGGAT GATGCGTGAA CCCTGTTTTC TACCCCATGT TCATGTACAT
  GGCTGGCATT CCATGTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164322	MGP_WTSI_7_52072679	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	T	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252146197					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164322	MGP_WTSI_7_52072679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466733 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	651 bp upstream
Cpgi18994	CpG island 18994	255 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1236 bp downstream
Rr646219	regulatory region 646219	903 bp distal
Rr646220	regulatory region 646220	746 bp distal
Rr646221	regulatory region 646221	161 bp distal
Rr646222	regulatory region 646222	934 bp proximal
Rr646223	regulatory region 646223	956 bp proximal
Tssr66426	transcription start site region 66426	1369 bp downstream
Tssr66427	transcription start site region 66427	1001 bp downstream
Tssr66428	transcription start site region 66428	975 bp downstream
Tssr66429	transcription start site region 66429	934 bp downstream
Tssr66430	transcription start site region 66430	903 bp downstream
Tssr72230	transcription start site region 72230	1652 bp upstream
Tssr72231	transcription start site region 72231	1627 bp upstream
Tssr72232	transcription start site region 72232	1383 bp upstream
Tssr72233	transcription start site region 72233	701 bp upstream
Tssr72234	transcription start site region 72234	343 bp upstream