rs252154948 SNP Detail

Summary

• ID
  rs252154948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTTTGG CTTTGGTTGC
  GGAGATCACT ACCTTTGGTA CAAATGCTTT TTCAGTTTCT TTTCTTATCT GCAATCAATG
  AATAAAAACA GGACCTTATT GTTTCCAAAT CTACAATGGG GCTAACCCAG CATCAGATCC
  AACAAAGTAG GAAATCGAGA GAGTGAACCT CCCTTTCTGA TATCGTTAAT TAAATCTTCA
  Y
  ATCTTAATTA ATACGAGCAC ATTTGTTTGC TCTCTGAACC ATGCATTAGT CTCTTTAGGG
  GAAATGGAAT GTCGGACTCA GGACTGCTTG TTTTACAGAC AGTGGCTACC TACCTTAGCA
  AGATTTGTGC CTTCTATAGG TGGTCATATG GTAATTTAAT TAGGTGCTAA TTCTATCAGC
  CAAAAGTAAT CTTACACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320356644	CHEV_2_76805375	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252154948					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797662 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1793 bp proximal
Tssr18508	transcription start site region 18508	1129 bp upstream
Tssr24819	transcription start site region 24819	213 bp upstream
Tssr24820	transcription start site region 24820	1139 bp downstream
Tssr24821	transcription start site region 24821	1158 bp downstream
Tssr24822	transcription start site region 24822	1185 bp downstream
Tssr24823	transcription start site region 24823	1846 bp downstream
Tssr24824	transcription start site region 24824	1873 bp downstream
Ttn	titin	within coordinates