rs252156648 SNP Detail

Summary

• ID
  rs252156648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116549481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acttattat acattaagta cacagtagct
  gtcttcagat gtgccagaag agggcttcag atctcattat gggtggttgt gagccatgtg
  gttgctggga tttgaactca gaacctttgg aagagaagtc aatgctctta accactgagc
  Y
  atctcacccg cccATTTTTT TGTTTTTAGT CAGGGTAATT TTTAACTCAA GCTGGCTTTT
  AGCCTCATGA ATACCTTGTA CCACCAGCTT CATGAGTAGG TAGGATTAAA GGTATACCAC
  AACTTCTGGC AGTGTGTTGT TGATTTCTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277796	CHEV_4_116364889	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252156648					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116549481 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38557	transcription start site region 38557	1587 bp downstream
Tssr38558	transcription start site region 38558	1225 bp downstream
Tssr38559	transcription start site region 38559	385 bp downstream
Tssr38560	transcription start site region 38560	347 bp downstream
Tssr38561	transcription start site region 38561	1435 bp upstream
Tssr38562	transcription start site region 38562	1533 bp upstream
Tssr38563	transcription start site region 38563	1663 bp upstream
Tssr38564	transcription start site region 38564	1796 bp upstream
Tssr38565	transcription start site region 38565	1827 bp upstream