rs252161151 SNP Detail

Summary

• ID
  rs252161151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101314763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATTACA GAGGATCAGA
  GAGCTACTGG GGTCAGGATA GCCTTCCTGG AGGACTGGAA GTCCTTGCAA GATGTGGGGC
  TTGAGCTTGG TTTCTGAAGG ATAGCATAGG AAACATAAAG AGGGTGGGGG CCTGTGTAAC
  CCACGAGGGC AGGACCTCCA TCTTACCTCT GTTAGTATTT CCTTAATACC AAGCATCTGT
  Y
  TACCAGCGTG TGACCCAGAG AAGGGAGACA TTCACATGTG GTCCTTGGAT TGGATTGGAT
  TCCATTCCCA GACTTCAGCT AGCCTCATGT GGACAGGCTA GCAGTTTGGC CAGTGAGGGT
  TGGAAGACAA GGTCTTTGGA ATAAGGTGAG AGAAGATGAA ATGGCCCTGC ATGCCAGGCA
  GGGGCGTTTG GAATTGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372544084	MGP_WTSI_7_108814070	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252161151					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372544084	MGP_WTSI_7_108814070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101314763 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Cpgi19507	CpG island 19507	1298 bp distal
Rr381220	regulatory region 381220	1273 bp upstream
Rr400489	regulatory region 400489	1758 bp downstream
Rr652443	regulatory region 652443	1773 bp distal
Rr652444	regulatory region 652444	1577 bp distal
Rr652445	regulatory region 652445	1523 bp distal
Rr652446	regulatory region 652446	950 bp proximal
Rr652447	regulatory region 652447	1205 bp proximal
Tssr68257	transcription start site region 68257	1943 bp downstream
Tssr68258	transcription start site region 68258	1939 bp downstream
Tssr68259	transcription start site region 68259	1877 bp downstream
Tssr68260	transcription start site region 68260	1822 bp downstream
Tssr68261	transcription start site region 68261	1766 bp downstream