rs252165963 SNP Detail

Summary

• ID
  rs252165963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167431996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTTGAA CTCCTGGATC
  CTCCATTTTG GGATTACAGG TGTATAGAAC CACACCCAGC TTTTGTTCAG TTTCTCATTT
  CCTTGTCTGG TACTAAGTGT CCACTGGCCT GGGTTTGGTG ACTAGGCCAT AATCCCCAAA
  CTGGAGAGGT TGAGGCAGAA GAATTGCCAG AAGAACTTTG AGGCCAACCT AGGCTACAGA
  R
  TAAAGTTAGC CTGAGCTACA TAGTAACACC CTGTCTTTTA TTAAAAAGAA AAGGAAAGGA
  AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAAGAAAAGA
  AAAACCAGGC AGTAGTGGCG CTTGCCTGTA AAACCAGCAC TTGGGAGGCA GAGGCAGGTG
  GATTTCTGAG TTCGAGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356508143	MGP_WTSI_2_167415576	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252165963					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356508143	MGP_WTSI_2_167415576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167431996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	892 bp distal
Gm11475	predicted gene 11475	1319 bp upstream
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	613 bp upstream
Rr397510	regulatory region 397510	432 bp downstream
Rr570647	regulatory region 570647	1686 bp distal
Rr570648	regulatory region 570648	671 bp distal
Rr570649	regulatory region 570649	282 bp distal
Rr570650	regulatory region 570650	617 bp distal
Rr570651	regulatory region 570651	351 bp proximal
Rr570652	regulatory region 570652	1253 bp proximal
Tssr769	transcription start site region 769	1075 bp downstream
Tssr21821	transcription start site region 21821	974 bp downstream
Tssr21822	transcription start site region 21822	517 bp downstream
Tssr21823	transcription start site region 21823	460 bp downstream
Tssr21824	transcription start site region 21824	662 bp upstream
Tssr27780	transcription start site region 27780	619 bp upstream
Tssr27781	transcription start site region 27781	441 bp downstream