rs252170391 SNP Detail

Summary

• ID
  rs252170391
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83005992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGCAGG TTCCCAACAA
  GCCTTTAGTG GCATGAAAGA GCATAATCAT CATAACCAAC TCATTTTGGG TGTACAATCA
  CCCCCAAAGT TTGCCAGTCA ATCACCCACT CCCCCTCCTC TCAAGGATCT CCGGGATAGC
  GCTGTTGTCT TCTCTGACCA ATGCTTTCTA AGATGAAGAG GTGATCCTTC TGGCATCTGA
  K
  ACACAGCTCC TGCTGTTGAG TAGACAGAAC TGGAGGATCT GGAATATTCA TGTTTGCTTG
  TGTTTAAATT GTTTTTAGCC AACACATAAA ATAGTGTACT GGTTACAGCT TCCCACACAA
  TGCCATTGTA CTGACAGTCA CCTCCCCTTT TTCCTCCCCT CTTCTTCCTC TTCTCTTCTG
  ATGGTTACCT TACTCATCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384065008	MGP_WTSI_11_82928668	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252170391					SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384065008	MGP_WTSI_11_82928668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83005992 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	1190 bp downstream
LxMm-9c11	LINE repeat x, subfamily 9, member c11	361 bp proximal
Rr237031	regulatory region 237031	9 bp proximal
Rr247350	regulatory region 247350	1208 bp proximal
Slfn1	schlafen 1	1683 bp upstream
Tssr103652	transcription start site region 103652	1514 bp upstream
Tssr103653	transcription start site region 103653	1622 bp upstream
Tssr103654	transcription start site region 103654	1643 bp upstream
Tssr103655	transcription start site region 103655	1702 bp upstream
Tssr103656	transcription start site region 103656	1747 bp upstream
Tssr103657	transcription start site region 103657	1786 bp upstream
Tssr103658	transcription start site region 103658	1808 bp upstream
Tssr103659	transcription start site region 103659	1837 bp upstream
Tssr109644	transcription start site region 109644	1424 bp downstream