rs252170456 SNP Detail

Summary

• ID
  rs252170456
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCTAC CCGACTGGAG
  ATGGCTCTGC CCACAGTGGG ATGGGCCTTC CCATCTCAAT CACAGATCAA GACACTCACC
  CCGACATGGA CGATCCTTCA ATTGAGGTTC CCTCTTCCCA GATGACTCTA AGTTGTTTCA
  AGCTGACAGT TAGAACTCAT CAGGACACTA ACCCTAGAAT TTCTACAGAC CATCAAATGA
  W
  AATGCATACC ACAAAGTTCT TAGAGCAAAG TTTATTCCTG GGGCGTCACT GTTCTGACAC
  CAGTATTCTC GATTCTGAGC CGAAAGTTGC CCAGAAACAC CCTGTCTCTC TAGATCTTTG
  TCCTGTGATA ACTGAATGCT TGCTTCCGGG GCGATCCACG CCCTCTTCTG GCTTGAGAGA
  CAACATTCAC ACGCACACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374218819	MGP_WTSI_8_35170750	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252170456					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374218819	MGP_WTSI_8_35170750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574850 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20241	CpG island 20241			419 bp proximal
Dctn6	dynactin 6			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr400814	regulatory region 400814			650 bp upstream
Rr661952	regulatory region 661952			772 bp distal
Rr661953	regulatory region 661953			within coordinates
Rr661954	regulatory region 661954			146 bp proximal
Rr661955	regulatory region 661955			155 bp proximal
Rr661956	regulatory region 661956			830 bp proximal
Tssr80889	transcription start site region 80889			66 bp downstream
Tssr80890	transcription start site region 80890			120 bp downstream
Tssr80891	transcription start site region 80891			747 bp downstream
Tssr80892	transcription start site region 80892			815 bp downstream
Tssr80893	transcription start site region 80893			1096 bp downstream