About   Help   FAQ
rs252174159 SNP Detail
Summary
  • ID
    rs252174159
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:30304722 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATGAGTTCT GGATCATCCA
    GGTTGGGATC AATAGTGGGG GAAATACACT TTTGTGCTTC TGCTGTGAGT AATAAGCCAA
    AAGACCCCAT TTGGGCTCAG TTTATTAGCA CAACCATGGG ATTTGATTGT CTCCTTGTTT
    CAGTCTCCCT AGCATTAAAA TGCTTATGCA GTAAGGTGGT CCCAGAGGGT GACGGAAGGC
    R
    GGACGACTTG GAGGAGGGTC TCAGGTGCTG CCAGGACTCT TAGTAGAATC TCAGTCTTAG
    CTGCCAACCC AGTGTCTGAC AGGGCAGTCC AGTTCACAGC TGGATAGACA GCCTGAATCA
    GAGAGGACAG GAGCTCACCA TTAGGATAGC TGCTTTAGAT AAGGATGGTG AGGGGCAGCC
    TGCCACCTCC TGCCTCCTCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353515392 MGP_WTSI_2_30270230 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252174159 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353515392 MGP_WTSI_2_30270230 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:30304722 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11436 CpG island 11436 381 bp proximal
Crat carnitine acetyltransferase within coordinates
Gm16323 predicted gene 16323 within coordinates
Ptpa protein phosphatase 2 protein activator 1340 bp upstream
Rr554310 regulatory region 554310 984 bp distal
Rr554311 regulatory region 554311 322 bp distal
Rr554312 regulatory region 554312 within coordinates
Rr554313 regulatory region 554313 804 bp proximal
Rr554314 regulatory region 554314 1443 bp proximal
Tssr17115 transcription start site region 17115 908 bp upstream
Tssr17116 transcription start site region 17116 1321 bp upstream
Tssr17117 transcription start site region 17117 1370 bp upstream
Tssr17118 transcription start site region 17118 1386 bp upstream
Tssr17119 transcription start site region 17119 1477 bp upstream
Tssr23368 transcription start site region 23368 1411 bp upstream
Tssr23369 transcription start site region 23369 592 bp upstream
Tssr23370 transcription start site region 23370 530 bp upstream
Tssr23371 transcription start site region 23371 592 bp downstream
Tssr23372 transcription start site region 23372 679 bp downstream
Tssr23373 transcription start site region 23373 708 bp downstream
Tssr23374 transcription start site region 23374 728 bp downstream
Tssr23375 transcription start site region 23375 750 bp downstream
Tssr23376 transcription start site region 23376 799 bp downstream
Tssr23377 transcription start site region 23377 862 bp downstream
Tssr23378 transcription start site region 23378 904 bp downstream
Tssr23379 transcription start site region 23379 924 bp downstream
Tssr23380 transcription start site region 23380 1057 bp downstream
Tssr23381 transcription start site region 23381 1293 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory