rs252174769 SNP Detail

Summary

• ID
  rs252174769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTCTCT GTGTGATAGG
  ATATATCTGT AATCCCAGCG TTTAAGAGGT AGAGGCAGGA GGATGATCAG GAGATCAGAG
  TCATCTTTGG CTATGTAGAG AGTTCCAGGC CAGCCTAGGT CACATTAGTC CTATTAAAAT
  CTAAACCCAG AGGCTGAGTG ATGGTCTATT CTGAAGGGAG GGCTGTGGAG CCACTGATCC
  Y
  TCCTTATACA GTGGCAGGCA GTCTTTCCAC GAGTTTGGTT GCTTTCTAGA TTAAAGAAAT
  CGCCGGGCGG TGGTGGCACA CGCCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGTGGA
  TCTCTGAGTT CGAGGCCAGC CTGGTCTACA AAGTGAGTTC CAGGACAGCC AAGACTATAC
  AGAGAAACCC TGTCTCGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351521290	MGP_WTSI_1_136455586	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252174769					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351521290	MGP_WTSI_1_136455586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1949 bp distal
Cpgi773	CpG island 773	877 bp proximal
Gm57134	predicted gene, 57134	1907 bp upstream
Kdm5b	lysine demethylase 5B	1169 bp upstream
Rr367005	regulatory region 367005	1749 bp downstream
Rr367006	regulatory region 367006	1032 bp upstream
Rr418945	regulatory region 418945	1918 bp distal
Rr418948	regulatory region 418948	1556 bp distal
Rr418949	regulatory region 418949	679 bp proximal
Tssr8904	transcription start site region 8904	1148 bp upstream
Tssr8905	transcription start site region 8905	1181 bp upstream
Tssr8906	transcription start site region 8906	1205 bp upstream