rs252177970 SNP Detail

Summary

• ID
  rs252177970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90624517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACCCT GAGAAAAAAA
  GACATGAAGA CTCAGGACTC ATCTTTTCTG TTGGTGTAAA ATCAACACCC TAAGGAACAC
  AAATTTCTTT AAACATTTGA CTTCTTGTCT CTGTGCTGCA ATTAATAAAA AATGGAAAGA
  ATCTACTCTG TGGTTCAGAA CTCTATCTTC CAAAGGCGCG CTTCACCCTA GCAGCCTCTT
  Y
  GGCTCAGAGG AATCCCTGCC TTTCCTCCCT TCATCTCAGC AGAGAATGTA GTTCCACATG
  GGCAACACAA TGAAAATAAA CGTTAATACT CTCCCATCTT ATGGGTGGTG ACCCTAGAAA
  CCAATACTTC AACATTACGA GAATTCTGAA TGAGAGACTA AAAGCTTATG AACTGTGGCT
  TTCCTTTGTC AGTGGGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365836752	MGP_WTSI_5_90905684	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252177970					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365836752	MGP_WTSI_5_90905684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90624517 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	56 bp downstream
Rr123615	regulatory region 123615	1775 bp distal
Rr123616	regulatory region 123616	within coordinates
Tssr47120	transcription start site region 47120	1976 bp downstream
Tssr47121	transcription start site region 47121	1346 bp downstream
Tssr47122	transcription start site region 47122	81 bp downstream
Tssr51774	transcription start site region 51774	1953 bp upstream
Tssr51775	transcription start site region 51775	1322 bp upstream
Tssr51776	transcription start site region 51776	147 bp upstream
Tssr51777	transcription start site region 51777	135 bp upstream
Tssr51778	transcription start site region 51778	111 bp upstream
Tssr51779	transcription start site region 51779	53 bp upstream