rs252181849 SNP Detail

Summary

• ID
  rs252181849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131453177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GGTTTGTCTT GGGGTGCCAG
  R
  GGAGGGCTAG GCGTTCTTCG CGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss914981981	MGP_WTSI_1_131525439	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252181849					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914981981	MGP_WTSI_1_131525439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131453177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Gm70877	predicted gene, 70877	1185 bp upstream
Rr396286	regulatory region 396286	1843 bp upstream
Rr418127	regulatory region 418127	1283 bp distal
Rr418128	regulatory region 418128	306 bp distal
Rr418129	regulatory region 418129	695 bp proximal
Rr418130	regulatory region 418130	789 bp proximal
Rr418131	regulatory region 418131	1196 bp proximal
Rr418132	regulatory region 418132	1898 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	160 bp downstream
Tssr8628	transcription start site region 8628	within coordinates
Tssr13589	transcription start site region 13589	277 bp upstream
Tssr13590	transcription start site region 13590	207 bp upstream
Tssr13591	transcription start site region 13591	180 bp upstream
Tssr13592	transcription start site region 13592	88 bp upstream
Tssr13593	transcription start site region 13593	11 bp upstream
Tssr13594	transcription start site region 13594	82 bp downstream
Tssr13595	transcription start site region 13595	118 bp downstream
Tssr13596	transcription start site region 13596	152 bp downstream
Tssr13597	transcription start site region 13597	397 bp downstream
Tssr13598	transcription start site region 13598	1036 bp downstream
Tssr13599	transcription start site region 13599	1117 bp downstream
Tssr13600	transcription start site region 13600	1286 bp downstream
Tssr13601	transcription start site region 13601	1827 bp downstream
Tssr13602	transcription start site region 13602	1863 bp downstream