rs252183957 SNP Detail

Summary

• ID
  rs252183957
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83301588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATCCTG AAACCTCTGC
  CACACCCAGA GTGAGTCCGT GTTCTTCTTT CTTGCTCTTT GCCCTCTCGA AGGCCCAGGA
  CTCCCCCATC CCCACCTGCT CGTGCTGTTA TGTAATTAAC CCAGCTGAGC CTCTTTGCTA
  AGCTGGCAGC ATCCAGGGAT GCCCCAGAGG CCTAGGGACC TGAAGGGTTG TGCGTGGTGG
  K
  AGCGTTAGTT TTGTCTCCGT AGGAAGCAGG CTCAGAGGAG CACCTGTTGG GGAAGGGACA
  TGCATGAGGC AGGCACAAGA GAGATTAGAG TCCTAGTCTT AGCTAAGGTG GCTTCCTTCC
  CTAAGTCTCT GGGTCTTGAT TTATTGGTGA TGGATTTTTG TTCTTCAATA AAATGAAAGG
  CATCATATAC ATGCATATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384069021	MGP_WTSI_11_83224264	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252183957					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384069021	MGP_WTSI_11_83224264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83301588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	404 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144	908 bp proximal
Gm72478	predicted gene, 72478	126 bp upstream
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452947	regulatory region 452947	1615 bp distal
Rr452948	regulatory region 452948	680 bp distal
Rr452949	regulatory region 452949	545 bp distal
Rr452950	regulatory region 452950	109 bp distal
Tssr103692	transcription start site region 103692	1473 bp downstream
Tssr103693	transcription start site region 103693	1044 bp downstream
Tssr103694	transcription start site region 103694	1035 bp downstream
Tssr103695	transcription start site region 103695	1013 bp downstream