rs252184847 SNP Detail

Summary

• ID
  rs252184847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32111141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTGCGC TCGTTCTCCT
  GCTGCAGCCG CGTGAAGTGC TGCAGCGCGA ACTCCAGCAG GTCGGCGGGC TGGTGCCTCA
  GCACCTCCAC CGTGAAGCCC TGCAGCAGCT CCGTGAGCCC CGCGGGGATC TCGATGCTCA
  TCCTGCCCGT GCACGCCGAG GCGCCTGGAC GCCGCCCTCG CCCCCTATCC GCGGTCCGGT
  S
  TCGGGCTGCG CGGCTCCCGA GCGAGCGCCC CGGGCGCTAC CGGCTGCGAG CGCGGCGCAC
  TGGGCCCCCG GCGAGGCTGC TCCGTGCGGC GGCAGCAGCA GAGCGAGCAC AGCCCGGGGA
  GGGTTGGCAG CATCTCCAGC TCCTCCCGCT CCTGCTCCCG CCGCCGCTGC GCCGCCCCCC
  GCCCGGCGCC CCGCCTCCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385502469	MGP_WTSI_12_32746007	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252184847					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385502469	MGP_WTSI_12_32746007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32111141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	within coordinates
Gm51992	predicted gene, 51992	1077 bp downstream
Gm60244	predicted gene, 60244	1579 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	within coordinates
Tssr113126	transcription start site region 113126	1152 bp downstream
Tssr116073	transcription start site region 116073	191 bp upstream
Tssr116074	transcription start site region 116074	52 bp downstream
Tssr116075	transcription start site region 116075	79 bp downstream
Tssr116076	transcription start site region 116076	163 bp downstream