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rs252202114 SNP Detail
Summary
  • ID
    rs252202114
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:142208906 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCTTCTCT TCTCCCGTCT
TCCCCCTCTC CCCCACGGTC CGAGGTTGGG CTTGGGGCCC TCCTATCTGT GAAGCCCCTC
CGTGCAGGAG TGGCTCTCGA CCAAGGACTG GTCCTGCAGT ACCCATGAGC AGTAGTTGTT
TCCAGAGCAG TTCACAGGCA GGTAGGCAGA AGTGAAGAAG AAGAGGCTGC GTGTCCAGGA
M
CAGGCGAGGA AGATAGAGTG GCCCATGCCA GCAAGGATAG TCATCCATTC TGGTGCCCCT
GCCCCTCCCA GGCATGCCCC ACCCATGTGT CCCCATCACT GCCTTCTGTG AGCAGTGAGC
CCATGCCCAG CCCCTTCCCC AACTGGGAAA TCAAGAGAAG CATGAACATT GAAAGCAGGC
AAGCACCCCA TGTTGTAGTC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373454573 MGP_WTSI_7_149841074 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252202114 SNP C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373454573 MGP_WTSI_7_149841074 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142208906 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19966 CpG island 19966 719 bp distal
Gm49394 predicted gene, 49394 within coordinates
Igf2 insulin-like growth factor 2 within coordinates
Mir483 microRNA 483 173 bp upstream
Rr167001 regulatory region 167001 within coordinates
Tssr2463 transcription start site region 2463 1316 bp upstream
Tssr70231 transcription start site region 70231 1604 bp downstream
Tssr70232 transcription start site region 70232 1551 bp downstream
Tssr70233 transcription start site region 70233 1508 bp downstream
Tssr70234 transcription start site region 70234 1470 bp downstream
Tssr70235 transcription start site region 70235 1447 bp downstream
Tssr70236 transcription start site region 70236 1425 bp downstream
Tssr70237 transcription start site region 70237 1324 bp downstream
Tssr70238 transcription start site region 70238 1294 bp downstream
Tssr70239 transcription start site region 70239 1164 bp downstream
Tssr70240 transcription start site region 70240 816 bp downstream
Tssr75867 transcription start site region 75867 1988 bp upstream
Tssr75868 transcription start site region 75868 1969 bp upstream
Tssr75869 transcription start site region 75869 1947 bp upstream
Tssr75870 transcription start site region 75870 1934 bp upstream
Tssr75871 transcription start site region 75871 1890 bp upstream
Tssr75872 transcription start site region 75872 1482 bp upstream
Tssr75873 transcription start site region 75873 1470 bp upstream
Tssr75874 transcription start site region 75874 1260 bp upstream
Tssr75875 transcription start site region 75875 1223 bp upstream
Tssr75876 transcription start site region 75876 1175 bp upstream
Tssr75877 transcription start site region 75877 1116 bp upstream
Tssr75878 transcription start site region 75878 834 bp upstream
Tssr75879 transcription start site region 75879 793 bp upstream
Tssr75880 transcription start site region 75880 762 bp upstream
Tssr75881 transcription start site region 75881 515 bp downstream
Tssr75882 transcription start site region 75882 556 bp downstream
Tssr75883 transcription start site region 75883 867 bp downstream
Tssr75884 transcription start site region 75884 905 bp downstream
Tssr75885 transcription start site region 75885 952 bp downstream
Tssr75886 transcription start site region 75886 1010 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory