rs252203942 SNP Detail

Summary

• ID
  rs252203942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184584521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGTTCCT GTCAGAGGGG TCTACTGACA
  CAGAGGCACC TGCTGTCTGC ATCGGGAAGG AAGCCAGTGT CATGCCATTT CACCAGAAGC
  AGCAGGCATA GCCCACGTTG CTTTGCGCAT GGGGACCTTG AAAGAAGCTG GCTGAAAATG
  R
  CCCTCCACAG TCGGTTCTGC CGTCTCAGCA TCCACTGTGT ATCCGCCTAT CTCTAGGAAC
  CAATAGACTG CAAGCCCACA CGTGAGCCAC AAGCGAGAGG CCACTGCATA CAGAATCGCA
  GGCCGGCCTC TTGACAAGAA CTGAGCCCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169915	CHEV_1_186676203	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252203942					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184584521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1164	CpG island 1164	200 bp distal
Gm34451	predicted gene, 34451	within coordinates
Rr396695	regulatory region 396695	29 bp upstream
Rr425307	regulatory region 425307	within coordinates
Rr425308	regulatory region 425308	920 bp proximal