rs252216631 SNP Detail

Summary

• ID
  rs252216631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88825717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTAGTT GGCACCTGAG
  GAGCAGATCT CAACCCACAG GTTGAGAACC TCTGCCCTAG AGGTTTTTCT TTTCCTGTCA
  GGCTGGGGAC CAGAGATGCC TCCCGAACCC TCCGTAAGAC GTTTTCCACT GAGCTATACA
  TTCCCAGCCT GGTTCTATTA AACGTTTCTC TTTTGTATTG CATCTGTGTG TTTATCGTGG
  R
  TCCCCAGGCC CACAGTGCTG TGGCAAGTGC TCTGTCCCTC CTTCCATGTG GATCTCAGGC
  TTGGCAGTAA GTGCTTTACC CACTCAGTCA TCTCAACAGA CCCTACGCTT TGCTTTCAGG
  AGAGAAAATG GGCTATCCCT TCGTTGCTGA TTATCCCAGA ACACAAACTT GTAGAATTAT
  TGCAGATTCT GCTCCTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365796689	MGP_WTSI_5_89106883	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252216631					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796689	MGP_WTSI_5_89106883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88825717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	1368 bp distal
Gm71600	predicted gene, 71600	within coordinates
Grsf1	G-rich RNA sequence binding factor 1	1687 bp upstream
Rr378262	regulatory region 378262	80 bp upstream
Rr614151	regulatory region 614151	1702 bp distal
Rr614152	regulatory region 614152	1880 bp distal
Rr614153	regulatory region 614153	1819 bp distal
Rr614154	regulatory region 614154	1625 bp distal
Rr614155	regulatory region 614155	595 bp distal
Rr614156	regulatory region 614156	921 bp proximal
Tssr51693	transcription start site region 51693	1729 bp upstream
Tssr51694	transcription start site region 51694	1672 bp upstream
Tssr51695	transcription start site region 51695	1649 bp upstream
Tssr51696	transcription start site region 51696	1621 bp upstream