rs252223946 SNP Detail

Summary

• ID
  rs252223946
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:17586317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCACAT CCAGCATTCC
  TGCAAGAGGG ATCAGAAGGA AGTTCCTAAA AGCAGGTCTA CTGCAGCCAG TGAGTGCACA
  CAGAGTAAAC TACTAGAAAA AGGCTGTAGG TTAATTGAAA AAATCCAAAC CAGGTGAAGG
  CTAGAGTTCA CAGATGCTCC ATTCTTAGAA AGGATTCGGG AGTTCTAGAG GATAGGATGG
  M
  AGGGGCCAGG GATGGACATC TCAGGCCCCC AGCATGGGAA CATTCATCCC ATGCTGACTG
  TGAGTTGTTC ACACCAAGGA ATGAGGATGG TGTGTGGAGG CAGGCTGATG GCCACATCAT
  CGCACCAGCA TTGTGCCCAC TGTTAGGGGC AGAGTCACGG TGTGCCACTC AAGTTTAGTG
  TTCTAGAGCT TTCTTGCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373858116	MGP_WTSI_8_17536301	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252223946					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373858116	MGP_WTSI_8_17536301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:17586317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20134	CpG island 20134	467 bp distal
Csmd1	CUB and Sushi multiple domains 1	715 bp upstream
Gm63936	predicted gene, 63936	within coordinates
Rr660279	regulatory region 660279	1031 bp distal
Rr660280	regulatory region 660280	530 bp distal
Rr660281	regulatory region 660281	1230 bp proximal
Rr660282	regulatory region 660282	1433 bp proximal
Tssr80518	transcription start site region 80518	1104 bp upstream
Tssr80519	transcription start site region 80519	1082 bp upstream
Tssr80520	transcription start site region 80520	1061 bp upstream
Tssr80521	transcription start site region 80521	911 bp upstream
Tssr80522	transcription start site region 80522	669 bp upstream
Tssr80523	transcription start site region 80523	656 bp upstream
Tssr80524	transcription start site region 80524	624 bp upstream