rs252225140 SNP Detail

Summary

• ID
  rs252225140
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129510010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCCAT GGCAGCCGAG
  CAAGCAAGAC GGTGAGCCAG CCGTCTCCAG GGCTTGCCCA CACAGCTCCT CCTGCATGGC
  AGCCAAGAAT CCAAGGAAAA CTTTTATTCT CCAGGATCCT CCCACCCTAC TTACCCCAAG
  AGGAGGTGAA ATTTGGTTTA AGTCCCAGGC AGAAGGTAAA AAGGCATGTC CTTCTTTCTC
  C
  TATCGTACCA GCTCAGCCCT CTAGCTTCTC TTAGCCTGAG ATCTACTGAT GGCCAGGGGC
  AAGGGCAGGA GACAGGTGGT ACCAGGGAGG CAGGACAAGG GCCTGCTTCC CTTGTCATTT
  TTCACAGCAT CTGCTTTTGG GAACCCTTCC TCTCCTGGAT CCCCAGATCT TTCCTGATGC
  TCCTGCTTTC CGGTATCTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ
ss363233311	MGP_WTSI_4_129293461	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ
rs252225140					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363233311	MGP_WTSI_4_129293461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129510010 () rs orientation: forward

Symbol	Name	Function Class
Dcdc2b	doublecortin domain containing 2b	1960 bp upstream
Iqcc	IQ motif containing C	within coordinates
Rr600294	regulatory region 600294	1818 bp distal
Tssr43540	transcription start site region 43540	1937 bp upstream