rs252232594 SNP Detail

Summary

• ID
  rs252232594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126812317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGAGG TGAGAGTGGG
  AGGCTAAGGA AAGCCTCCCC AACCCTCCTC CCCACCCTCC TCCCTACCCC TCCTTCCCAG
  AAAGTGCACC TGTTGAGGGA GGAGGAGAAT CCTTCCCCTC CCTTCAAAGG GTGGAGGGGG
  ACAGCTGGCT CAGGGCCAGA ATCTGATCTG CCTTGGGCCA ATTCCTGGTT TCATCTGTCC
  Y
  CACCCCTACC CCTCCACAGG CGTTCACTGT AATTGATCAG AACAGGGATG GCATTATCGA
  CAAAGAGGAT CTTCGGGACA CCTTTGCAGC CATGGGTGAG GCCCCTACTC CTATCTATAA
  ATGTTGAAAG CTATGGAGTT GGAGGGGAAT CCAGTGGCTT CAGGCCTTAA TCTGCCCAGA
  TGAAAAAAAT GAATGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083264	MGP_WTSI_7_134356659	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252232594					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083264	MGP_WTSI_7_134356659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126812317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1451 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655745	regulatory region 655745	1770 bp distal
Rr655746	regulatory region 655746	548 bp proximal
Septin1	septin 1	1302 bp downstream
Tssr69169	transcription start site region 69169	1434 bp downstream
Tssr69170	transcription start site region 69170	515 bp downstream
Tssr69171	transcription start site region 69171	508 bp downstream
Tssr69172	transcription start site region 69172	473 bp downstream
Tssr69173	transcription start site region 69173	282 bp downstream
Tssr69174	transcription start site region 69174	16 bp downstream
Tssr69175	transcription start site region 69175	within coordinates
Tssr69176	transcription start site region 69176	11 bp upstream
Tssr69177	transcription start site region 69177	47 bp upstream
Tssr69178	transcription start site region 69178	1061 bp upstream
Tssr69179	transcription start site region 69179	1105 bp upstream
Tssr69180	transcription start site region 69180	1387 bp upstream
Tssr74959	transcription start site region 74959	321 bp downstream
Tssr74960	transcription start site region 74960	1042 bp downstream
Tssr74961	transcription start site region 74961	1601 bp downstream
Tssr74962	transcription start site region 74962	1869 bp downstream
Tssr74963	transcription start site region 74963	1898 bp downstream
Tssr74964	transcription start site region 74964	1940 bp downstream