rs252238974 SNP Detail

Summary

• ID
  rs252238974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:103561346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCACTTG ATACTGAGCT
  CTTCTCAATA TCAGTCTCAG TCGTGCACTA ACATGAACAC TGTGGGGAAT GAAGCCTGGA
  CAGGTTAATC AGCTCACTGA ATGAAGGCAT AGTAAGACTG GGATTCAGGC TAGGAACCTG
  AATTTATGTC AAGAGGCTCT TTATACCTTC TGTTTCTTCC TGATACCTCC CTAAGACAGA
  R
  TTCATTCCTG GAAAATATCC CAATGACAAC TTGTAGTCTT GAAAAATGAT GTCTCTATCT
  CCCTTCTTTT GTGGCTAAGT CAGTATTGTA GCATAAATTA ATTCCCTTGT TTACTCACCG
  GAGAAGTTTT CTAATCTCTT ACATCTGATT ACAGTTTCTT ATTTCTGTGG GAGCAACCAT
  TCCATTCTGT TGCAGACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372590012	MGP_WTSI_7_111060653	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252238974					SNP	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372590012	MGP_WTSI_7_111060653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:103561346 () rs orientation: forward

Symbol	Name	Function Class
Rr152497	regulatory region 152497	1346 bp distal
Rr152498	regulatory region 152498	855 bp proximal
Rr168391	regulatory region 168391	within coordinates
Rr366623	regulatory region 366623	within coordinates