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rs252241590 SNP Detail
Summary
  • ID
    rs252241590
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128920 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TACTA TTCTTTTCCC CTTCTCCTCT
Y
CTTCTTCAAT CTCCTGTCCT CTTCC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198936 CHEV_7_51734866 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs252241590 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128920 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1551 bp downstream
Tssr2227 transcription start site region 2227 476 bp downstream
Tssr2228 transcription start site region 2228 582 bp upstream
Tssr2229 transcription start site region 2229 858 bp upstream
Tssr2230 transcription start site region 2230 1037 bp upstream
Tssr2231 transcription start site region 2231 1170 bp upstream
Tssr2232 transcription start site region 2232 1345 bp upstream
Tssr2233 transcription start site region 2233 1378 bp upstream
Tssr2234 transcription start site region 2234 1537 bp upstream
Tssr66247 transcription start site region 66247 1961 bp downstream
Tssr66248 transcription start site region 66248 1920 bp downstream
Tssr66249 transcription start site region 66249 1897 bp downstream
Tssr66250 transcription start site region 66250 1878 bp downstream
Tssr66251 transcription start site region 66251 1853 bp downstream
Tssr66252 transcription start site region 66252 1822 bp downstream
Tssr66253 transcription start site region 66253 1794 bp downstream
Tssr66254 transcription start site region 66254 1746 bp downstream
Tssr66255 transcription start site region 66255 1719 bp downstream
Tssr66256 transcription start site region 66256 1670 bp downstream
Tssr66257 transcription start site region 66257 1659 bp downstream
Tssr66258 transcription start site region 66258 1616 bp downstream
Tssr66259 transcription start site region 66259 1580 bp downstream
Tssr66260 transcription start site region 66260 1473 bp downstream
Tssr66261 transcription start site region 66261 1452 bp downstream
Tssr66262 transcription start site region 66262 1445 bp downstream
Tssr66263 transcription start site region 66263 1433 bp downstream
Tssr66264 transcription start site region 66264 1409 bp downstream
Tssr66265 transcription start site region 66265 1366 bp downstream
Tssr66266 transcription start site region 66266 1349 bp downstream
Tssr66267 transcription start site region 66267 1312 bp downstream
Tssr66268 transcription start site region 66268 1296 bp downstream
Tssr66269 transcription start site region 66269 1260 bp downstream
Tssr66270 transcription start site region 66270 1225 bp downstream
Tssr66271 transcription start site region 66271 1193 bp downstream
Tssr66272 transcription start site region 66272 1141 bp downstream
Tssr66273 transcription start site region 66273 1123 bp downstream
Tssr66274 transcription start site region 66274 1118 bp downstream
Tssr66275 transcription start site region 66275 1098 bp downstream
Tssr66276 transcription start site region 66276 1078 bp downstream
Tssr66277 transcription start site region 66277 1058 bp downstream
Tssr66278 transcription start site region 66278 1014 bp downstream
Tssr66279 transcription start site region 66279 969 bp downstream
Tssr66280 transcription start site region 66280 947 bp downstream
Tssr66281 transcription start site region 66281 907 bp downstream
Tssr66282 transcription start site region 66282 890 bp downstream
Tssr66283 transcription start site region 66283 876 bp downstream
Tssr66284 transcription start site region 66284 864 bp downstream
Tssr66285 transcription start site region 66285 850 bp downstream
Tssr66286 transcription start site region 66286 811 bp downstream
Tssr66287 transcription start site region 66287 775 bp downstream
Tssr66288 transcription start site region 66288 750 bp downstream
Tssr66289 transcription start site region 66289 668 bp downstream
Tssr66290 transcription start site region 66290 630 bp downstream
Tssr66291 transcription start site region 66291 604 bp downstream
Tssr66292 transcription start site region 66292 572 bp downstream
Tssr66293 transcription start site region 66293 550 bp downstream
Tssr66294 transcription start site region 66294 526 bp downstream
Tssr66295 transcription start site region 66295 261 bp downstream
Tssr66296 transcription start site region 66296 90 bp downstream
Tssr66297 transcription start site region 66297 66 bp downstream
Tssr66298 transcription start site region 66298 11 bp downstream
Tssr66299 transcription start site region 66299 6 bp upstream
Tssr66300 transcription start site region 66300 13 bp upstream
Tssr66301 transcription start site region 66301 37 bp upstream
Tssr66302 transcription start site region 66302 51 bp upstream
Tssr66303 transcription start site region 66303 92 bp upstream
Tssr66304 transcription start site region 66304 100 bp upstream
Tssr66305 transcription start site region 66305 110 bp upstream
Tssr66306 transcription start site region 66306 144 bp upstream
Tssr66307 transcription start site region 66307 201 bp upstream
Tssr66308 transcription start site region 66308 254 bp upstream
Tssr66309 transcription start site region 66309 275 bp upstream
Tssr66310 transcription start site region 66310 313 bp upstream
Tssr66311 transcription start site region 66311 390 bp upstream
Tssr66312 transcription start site region 66312 406 bp upstream
Tssr66313 transcription start site region 66313 427 bp upstream
Tssr66314 transcription start site region 66314 435 bp upstream
Tssr66315 transcription start site region 66315 455 bp upstream
Tssr66316 transcription start site region 66316 514 bp upstream
Tssr66317 transcription start site region 66317 526 bp upstream
Tssr66318 transcription start site region 66318 571 bp upstream
Tssr66319 transcription start site region 66319 594 bp upstream
Tssr66320 transcription start site region 66320 621 bp upstream
Tssr66321 transcription start site region 66321 639 bp upstream
Tssr66322 transcription start site region 66322 659 bp upstream
Tssr66323 transcription start site region 66323 705 bp upstream
Tssr66324 transcription start site region 66324 734 bp upstream
Tssr66325 transcription start site region 66325 764 bp upstream
Tssr66326 transcription start site region 66326 805 bp upstream
Tssr66327 transcription start site region 66327 819 bp upstream
Tssr66328 transcription start site region 66328 835 bp upstream
Tssr66329 transcription start site region 66329 874 bp upstream
Tssr66330 transcription start site region 66330 893 bp upstream
Tssr66331 transcription start site region 66331 907 bp upstream
Tssr66332 transcription start site region 66332 928 bp upstream
Tssr66333 transcription start site region 66333 976 bp upstream
Tssr66334 transcription start site region 66334 988 bp upstream
Tssr66335 transcription start site region 66335 997 bp upstream
Tssr66336 transcription start site region 66336 1006 bp upstream
Tssr66337 transcription start site region 66337 1024 bp upstream
Tssr66338 transcription start site region 66338 1080 bp upstream
Tssr66339 transcription start site region 66339 1131 bp upstream
Tssr66340 transcription start site region 66340 1176 bp upstream
Tssr66341 transcription start site region 66341 1221 bp upstream
Tssr66342 transcription start site region 66342 1283 bp upstream
Tssr66343 transcription start site region 66343 1315 bp upstream
Tssr66344 transcription start site region 66344 1460 bp upstream
Tssr66345 transcription start site region 66345 1493 bp upstream
Tssr66346 transcription start site region 66346 1549 bp upstream
Tssr66347 transcription start site region 66347 1587 bp upstream
Tssr66348 transcription start site region 66348 1628 bp upstream
Tssr66349 transcription start site region 66349 1652 bp upstream
Tssr66350 transcription start site region 66350 1680 bp upstream
Tssr66351 transcription start site region 66351 1688 bp upstream
Tssr66352 transcription start site region 66352 1724 bp upstream
Tssr66353 transcription start site region 66353 1798 bp upstream
Tssr66354 transcription start site region 66354 1812 bp upstream
Tssr66355 transcription start site region 66355 1839 bp upstream
Tssr66356 transcription start site region 66356 1856 bp upstream
Tssr66357 transcription start site region 66357 1870 bp upstream
Tssr66358 transcription start site region 66358 1882 bp upstream
Tssr66359 transcription start site region 66359 1908 bp upstream
Tssr66360 transcription start site region 66360 1920 bp upstream
Tssr66361 transcription start site region 66361 1946 bp upstream
Tssr66362 transcription start site region 66362 1978 bp upstream
Tssr66363 transcription start site region 66363 1995 bp upstream
Tssr72200 transcription start site region 72200 1055 bp upstream
Tssr72201 transcription start site region 72201 545 bp upstream
Tssr72202 transcription start site region 72202 297 bp downstream
Tssr72203 transcription start site region 72203 683 bp downstream
Tssr72204 transcription start site region 72204 1279 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory