rs252251989 SNP Detail

Summary

• ID
  rs252251989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109720618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTTTTT CCTGGAAATT
  ATGAGACAGG ACCACTACAG AGCAAAGGGG TTTTAAACTT CTGGTCCTCC TGCCTCAGCT
  TCCAGACTGT TTGAATCACA GGTGTGTGCG CCAGCACTCA CCTCTGTTAC ACTTCAGTTT
  TGTTTTGTTT TTTTTCTCTC CCGGGACCAA TCAGTTTGGC TAGCGCACTC TCACGTGTAA
  R
  CGAACAAATA TAAACACCAC GGTTGCAGGT CAGGCATTCG GGCTTGTGGC AGGACCAATT
  ATCACGGATA AGTCTGGCTG TGAGGGACAC AAGACTGTGT GAGAGGCCAC CTCTGTGTCC
  TAGTCCTGCA GCTCATTATC TGAGTTTCGC GCTGGGCAAG GTCCAGAGCT CGGTCACTGT
  TTCCGGCTCG GACCGCGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394504	CHEV_7_117264925	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252251989					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109720618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	12 bp proximal
D7Wsu130e	DNA segment, Chr 7, Wayne State University 130, expressed	1394 bp distal
Gm45819	predicted gene 45819	within coordinates
Rr400541	regulatory region 400541	361 bp upstream
Rr653190	regulatory region 653190	145 bp proximal
Tssr68487	transcription start site region 68487	622 bp upstream
Tssr68488	transcription start site region 68488	842 bp upstream
Tssr68489	transcription start site region 68489	888 bp upstream
Tssr68490	transcription start site region 68490	1096 bp upstream
Tssr68491	transcription start site region 68491	1308 bp upstream
Tssr74248	transcription start site region 74248	1079 bp upstream
Tssr74249	transcription start site region 74249	168 bp downstream
Tssr74250	transcription start site region 74250	1479 bp downstream
Tssr74251	transcription start site region 74251	1508 bp downstream
Tssr74252	transcription start site region 74252	1590 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	648 bp upstream